KEGG   Zonotrichia leucophrys gambelii (white-crowned sparrow): 135443751
Entry
135443751         CDS       T09958                                 
Symbol
SEM1
Name
(RefSeq) 26S proteasome complex subunit SEM1
  KO
K10881  26 proteasome complex subunit DSS1
Organism
zle  Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03050  Proteasome
zle03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:zle00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03050 Proteasome
    135443751 (SEM1)
  09124 Replication and repair
   03440 Homologous recombination
    135443751 (SEM1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zle03019]
    135443751 (SEM1)
   04131 Membrane trafficking [BR:zle04131]
    135443751 (SEM1)
   03051 Proteasome [BR:zle03051]
    135443751 (SEM1)
   03400 DNA repair and recombination proteins [BR:zle03400]
    135443751 (SEM1)
Messenger RNA biogenesis [BR:zle03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX-2 complex
     135443751 (SEM1)
Membrane trafficking [BR:zle04131]
 Exocytosis
  Tethering complex
   Exocyst complex assembly proteins
    135443751 (SEM1)
Proteasome [BR:zle03051]
 Eukaryotic proteasome
  Regulatory particles
   PA700 (19S proteasome)
    non-ATPase subunits
     135443751 (SEM1)
DNA repair and recombination proteins [BR:zle03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Other HR factors
     135443751 (SEM1)
SSDB
Motif
Pfam: DSS1_SEM1
Other DBs
NCBI-GeneID: 135443751
NCBI-ProteinID: XP_064560421
LinkDB
Position
2:complement(26115506..26121643)
AA seq 70 aa
MSEKKQPVDLGLLEEDDEFEEFPAEDWTGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAEL
EKHGYKMETS
NT seq 213 nt   +upstreamnt  +downstreamnt
atgtcggagaagaagcagccggtggacctggggctcctcgaggaggacgacgagtttgag
gagttcccggctgaagattggactggtttagatgaagatgaagatgcacatgtctgggaa
gacaactgggatgatgacaatgtagaagatgatttttccaatcaattaagagctgaatta
gaaaaacatggatacaagatggaaacgtcatag

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