Zonotrichia leucophrys gambelii (white-crowned sparrow): 135443940
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Entry
135443940 CDS
T09958
Symbol
EXOSC7
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135443940 (EXOSC7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zle03019
]
135443940 (EXOSC7)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
135443940 (EXOSC7)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
135443940 (EXOSC7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
135443940
NCBI-ProteinID:
XP_064560918
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All DBs
Position
2:46464283..46485147
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AA seq
290 aa
AA seq
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MASVVLSEAEKLYIVHGVQEDLRVDGRGCEDYRCAEVETDVVSNTSGSARVKLGETDILV
GIKAEMGTPKLEKPDEGYLEFFVDCSSNSPELEGRGGEELGTDIANTLYRVFSCENSVDL
KSLCINPKEHCWVLYVDVLLLECGGNIFDAISIAVKAALFNTRIPKVRVLEDEEGTKEIE
LSDDPYDCIRLSVDEVPCIVTLSKIGYRHVVDATLQEEACSLASLLISVTSKGAITSMKK
VGKGSLDPESIFEMMETGQRVGKSLHIALQKILDEEENLGTSRPKVGFLG
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgtggtgctgagcgaggcggagaagctttacatcgtgcacggcgtgcaggaa
gacctccgtgtagacggtcgaggctgtgaagattacagatgtgcagaagtagaaacagat
gttgtatcaaacacaagtggatctgcaagagtaaagctgggagaaactgatatcttggta
ggcataaaagctgaaatggggacaccgaagttggagaaaccagatgaaggttacctggaa
ttttttgttgactgttcttcaaattctcctgagttggaaggccggggaggagaagaactt
ggcacagatatagcaaatacactgtacagagtattcagctgtgagaacagtgtagacttg
aaatccctttgtattaatcccaaagagcactgctgggttctctatgtggatgtattgtta
ttggaatgtggtgggaacatctttgatgcaatctctatcgcagtgaaggcagctctcttt
aacacaagaatacccaaagtgcgtgttctggaggatgaggaaggcaccaaagagattgag
ctgtctgatgacccttacgattgtattcgactcagcgtagatgaggtgccctgcattgtc
acactaagcaaaattggatataggcacgtggtggatgccacccttcaggaagaagcttgt
tctttggcaagcctgcttatttcagtgaccagtaaaggcgccatcacttctatgaagaag
gtggggaaaggcagcctggatcctgagagtatttttgaaatgatggagacaggacaaaga
gtaggcaagtcacttcacatagcccttcagaagattctggatgaagaagagaatttgggg
acttcacgaccaaaagttggatttctaggatga
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