Zonotrichia leucophrys gambelii (white-crowned sparrow): 135444179
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Entry
135444179 CDS
T09958
Symbol
DROSHA
Name
(RefSeq) ribonuclease 3
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
135444179 (DROSHA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zle03019
]
135444179 (DROSHA)
03009 Ribosome biogenesis [BR:
zle03009
]
135444179 (DROSHA)
03036 Chromosome and associated proteins [BR:
zle03036
]
135444179 (DROSHA)
Enzymes [BR:
zle01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
135444179 (DROSHA)
Messenger RNA biogenesis [BR:
zle03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
135444179 (DROSHA)
Ribosome biogenesis [BR:
zle03009
]
Eukaryotic type
90S particles
RNase
135444179 (DROSHA)
Prokaryotic type
rRNA processing factors
135444179 (DROSHA)
Chromosome and associated proteins [BR:
zle03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
135444179 (DROSHA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
YcaO
Motif
Other DBs
NCBI-GeneID:
135444179
NCBI-ProteinID:
XP_064561511
LinkDB
All DBs
Position
2:72101279..72175000
Genome browser
AA seq
1336 aa
AA seq
DB search
MSFHSGRGCPRGQGGPGARTSTQTYRPQNLRQLHPQQPSVPYQYEQQTAPPTTYSNPPAT
GYMPPRPDFVPYPPPVPPSTQNPISQCPMRPPFPNHQMRQSFPVPPCFPPTPPPVPNPSN
TPVPGTPAGQSTFPYMMPPPTVPHPPPPPVMPQQVSYQPVYSAGYSQQSFPPPSFSSYQH
SSGSFPSSAASSSAGSSHFRHTGQYQAEKAQSERRSPDRSKHYDEHRHREHGHMHGDRHR
SANHGDRRDRGRSPDRRRQESSRHRTDYDRGRISPHHRSYERNRERERERHRHRDSRRSP
SPDRSYKKDYKRAGSRSPSRERKRTRWEEDRERWSENQSSSKEKNYTAVKDKESEENVSE
KNEEEDEELLKPVWVRCTHSESYYSNDPMDQVGDSTVVGTSKLRDLYEKFDEELGKRQAK
AKAARPPWEPPKTKLDEDLESSSESECDSEDDSSCSSSSDSDVIDVIAEIKRKKAHPDRL
HEELWYNDPGQMNDGPLCKCSAKARRTGIRHGIYPGEEPIKPCRPMTNNAGRLYHYRITV
SPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPE
NFCVRGLELFSSYLFKDILELYDWNLKGPSLENDSVSCPRYHFMPRFVRFLPDGGKEVLS
MHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTSPGMKPSSVRIDQLD
REQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQADKQKL
SQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHVRYHQCLMH
LDKLIGYTFRDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHIHMR
KKGINTLINIMSRLGQDDPAPSRINHNERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLAT
YRTAIVQNQHLAMLAKKLELERFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLE
EAKQLFGRLLFNEKDLRDVWLNYPLHPLQLQESNTDRQLIETSPVLQKLTEFEEAIGVIF
THVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLR
SSLVNNRTQAKVAEELGMQEFAITNDKTKRPVTLRTKTLADLLESFIAALYIDKDLEYVH
TFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTY
TVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFPQMAHQKRFIERKYRQELKELRWE
REHQERESEETEEARK
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
atgtctttccattctgggcgaggatgtccccgtggccaggggggaccaggagcaagaact
tcaacgcagacctaccgccctcagaacctgcggcagcttcacccacagcagccctccgtg
ccgtaccagtatgagcagcaaaccgcccctccgacaacctactccaaccctcccgccacc
gggtacatgcctcccaggccagactttgtgccctatcctcctccagtgcccccttccacg
caaaatcccatcagccagtgtcccatgaggccaccgtttccaaaccaccagatgcggcag
agcttcccagtgcctccatgtttccctcccactcctccaccagtgccaaaccctagcaac
actcccgtgccaggaacgcctgctggacaaagcacctttccttacatgatgcctcccccc
acagtaccacaccctccgccgccgccggtcatgccgcagcaggtcagctaccagcccgtg
tactcagcgggctactcgcagcagtccttcccgccgcccagcttcagcagctaccagcac
agctccggctccttcccgagcagcgctgccagcagcagcgccggcagcagccacttccgg
cacacggggcagtaccaggcagagaaggcccaaagtgagcggcgctccccggacaggagc
aagcactacgatgagcaccggcaccgcgagcacgggcacatgcacggcgacaggcaccgc
tccgccaaccacggcgatcgtcgggatcgcggccgcagcccggataggaggaggcaggag
agcagtcggcaccggacggattatgacagaggaaggatatcgcctcatcacagaagttat
gagcgaaacagggagcgggagagggagaggcatcgacaccgtgacagcagaagatcacca
tcaccagacagatcctacaaaaaggattacaagagagcaggaagccggtctccaagcaga
gagagaaagagaacccggtgggaggaggacagagaaaggtggtctgagaaccagagctcc
agtaaagagaaaaactatactgctgtcaaagacaaagaatcagaagagaatgtatctgaa
aaaaatgaagaggaagatgaggaattgctcaagccagtctgggttcgctgtacccattct
gaaagctattattccaatgaccctatggatcaagtgggggactctactgtggtaggaaca
agcaagctccgggatctgtatgaaaagtttgacgaggagttagggaagcgacaggcaaag
gccaaagcagccaggccaccatgggagccaccaaaaaccaagctggatgaagatttagag
agctccagtgagtcagagtgtgactccgaagatgacagcagctgctccagcagttcagat
tcggatgttattgacgtcattgcagaaattaaacgtaaaaaagcacaccctgatcgtctc
cacgaggaattgtggtacaatgatccaggacagatgaatgatggacctttgtgcaaatgc
agtgctaaagcccggcgaacaggaataagacatggcatttatcctggtgaagagcccatt
aaaccatgtcgtcccatgaccaacaatgctggaagactgtaccactaccgaattactgtg
tcacctcccacaaatttcttaacagacagacctactgttattgagtatgatgaccatgaa
tatatctttgaagggttctccatgtttgcacatgccccgctgacgaatattcctctatgc
aaagtaatcaggtttaacattgactatacaattcatttcattgaggagatgatgcctgag
aatttttgtgtgagaggccttgaactgttctcttcatatctattcaaagatattttggaa
ttgtatgactggaatcttaaaggtccttcacttgaaaatgattctgtttcctgtcccaga
taccacttcatgccacggtttgtgagatttctcccagatggaggaaaagaagtactctca
atgcatcagattctcctctacttgttacgatgcagtaaagctctggtgcctgaagaggag
attgccaacatgcttcagtgggaagaactggaatggcagaaatatgcagaagaatgcaaa
gggatgatcgttaccagccctggcatgaagcccagctcagttcgtattgatcaactagac
cgcgaacaattcaatcctgatgtaattactttccctattattgtgcactttgggatacga
cctgctcaactcagttatgctggagatcctcaataccaaaagctgtggaagagttacgtg
aagctgcgtcacctgctggctaatagtcccaaagtcaaacaggctgataaacagaaatta
tcacaaagagaggaagcactgcagaaaatccgccagaagaacaccatgagacgtgaagtg
acagtggagttgagcagccagggcttctggaaaacagggatacgctctgatgtctgccag
catgcaatgatgcttcctgtgctcacccaccatgtccgctaccatcagtgtctgatgcac
ttggacaaactgataggctacacttttcgagataggtgcttgctgcagcttgccatgact
cacccaagccatcatttaaattttgggatgaatccggatcatgccagaaattccttatcc
aattgtgggattcgacagcccaagtatggagatagaaaagttcaccatatacacatgaga
aaaaaagggataaacaccctgataaatattatgtcccgtttgggacaggatgatccagct
ccttccaggattaaccacaatgagcgtttagaatttctgggagatgctgtggtggagttc
ttaacaagtgtccacttatactacctgtttcccactctggaggaaggaggattagctacg
taccgcactgccatcgtacagaaccagcacctggccatgctggctaagaagctggaactg
gaacgattcatgctctacgctcatggtccagacctttgcagggagtcagatctccgccat
gccatggccaactgctttgaagccctcataggagctgtttatctagagggaagcctagaa
gaagcaaaacaattatttggacgtttgctcttcaatgaaaaggacctgcgggatgtatgg
cttaattatccactacacccactccaactgcaggagtccaatactgacaggcaactcatt
gagacctctccagttcttcaaaagcttacagagtttgaggaggcaattggagtcatcttt
actcacgttcgacttctagcacgtgcattcactctgaggacagtaggctttaaccatctg
actctaggccacaaccagaggatggaattcctgggtgactccataatgcagttggtagcc
acagagtatttattcatacatttccctgatcatcatgaagggcacttaacgctgttgaga
agttctttggtgaacaacaggacacaggccaaggtggcagaggagctgggcatgcaagag
tttgccatcactaacgacaagacaaaaagacctgtaactcttcgaactaagactttggct
gatctcttggaatcctttattgctgccctgtacattgataaagatttggaatatgttcac
actttcatgaatgtttgcttttttccacggctaaaggagtttattttaaatcaagattgg
aatgatcctaaatctcagcttcagcagtgctgcttgactctcaggacagaaggaaaagag
ccggacattcctctctacaagaccctgcagacagtgggaccttctcatgccaggacatac
acagtagctgtctacttcaaaggggaaagaataggatgtggtaaaggtccaagtattcag
caagcagaaatgggagctgcaatggacgcacttgaaaaatataactttccccagatggcc
catcagaaacggttcattgaacggaagtacagacaagagttgaaagaattgaggtgggaa
agagagcatcaagagagagagtcagaggagactgaagaagcaaggaaataa
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