Zonotrichia leucophrys gambelii (white-crowned sparrow): 135444587
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Entry
135444587 CDS
T09958
Symbol
DDX3X
Name
(RefSeq) ATP-dependent RNA helicase DDX3X isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
135444587 (DDX3X)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zle03019
]
135444587 (DDX3X)
03041 Spliceosome [BR:
zle03041
]
135444587 (DDX3X)
03036 Chromosome and associated proteins [BR:
zle03036
]
135444587 (DDX3X)
Enzymes [BR:
zle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135444587 (DDX3X)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
135444587 (DDX3X)
mRNA cycle factors
Common to processing body (P body) and stress granule
135444587 (DDX3X)
Spliceosome [BR:
zle03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
135444587 (DDX3X)
Chromosome and associated proteins [BR:
zle03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
135444587 (DDX3X)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
135444587
NCBI-ProteinID:
XP_064562562
LinkDB
All DBs
Position
1:complement(8209233..8227964)
Genome browser
AA seq
653 aa
AA seq
DB search
MSHVAVENALGLDQQFSGLDLNSSDSQSEGSSTSKGRYIPPHLRNREASKQGFDSGGWSS
RRDKDAYSSFGARSDRDSKSSFFDRGTGSRGGRYEERGRGGDYDRSGFGRFDRGGGNSRW
CDKSDEDDWSKPLPPSERLEQELFSGSNTGINFEKYDDIPVEATGSNCPPHIESFSDVDM
GEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGP
GDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIG
QQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ
DTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEPDK
RSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQF
RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE
RNINITKDLLDLLVEAKQEVPSWLENMAYEQHHKGGGSRGRSKSSRFSGGFGARDYRTSS
GFGSSSSSSSRSTSSRSGGSGSRGFGGGGYGGFYNSDGYGGNYNSQGVDWWGN
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggcggtggaaaatgccctcggtctagaccagcagttttctggtctagac
ttgaattcctcagactctcagagtgaaggaagttctacaagcaaaggccgatacattcct
cctcacttgcggaacagggaggcttcaaaacagggtttcgacagcggcggctggagctcc
aggcgagacaaggatgcctacagcagcttcggcgcgcgctccgaccgcgactccaagtcc
agcttcttcgaccgcggcaccggctccagaggagggagatacgaggagcgaggcagaggc
ggggactatgaccggagtggcttcggcagatttgaccgtggcggcgggaacagccgctgg
tgtgacaaatccgatgaggatgactggtctaagcctctccccccgagtgaacgcctagaa
caggaactcttttcaggaagcaatactggcattaactttgagaaatatgatgatattcct
gttgaagcaacaggcagcaactgtcctccacatattgaaagtttcagtgatgttgatatg
ggagaaatcatcatgggaaacattgaactcacacgctacacccgtcctactccagtccag
aaacacgcaatacctattattaaagaaaagagagatttaatggcctgtgctcagacaggg
tctgggaaaacagctgcatttcttctaccaatactgagccagatatatgcagatggtcct
ggtgatgccttgagagcaatgaaggagaatgggaggtacgggcgccgtaagcaatatcca
atctcactggtcttggctcccactagagaattggctgtgcagatctatgaggaagccaga
aagtttgcataccgctccagagttcgcccctgcgttgtatatggtggtgcagacattggc
cagcagatccgtgacttagaacgtgggtgtcacttgcttgtagcaactccaggacgactg
gttgatatgatggagagaggaaagattggactggatttctgcaagtacctagtccttgat
gaagctgacagaatgcttgacatggggtttgaacctcaaattcgtcgaattgttgaacaa
gatactatgccaccaaagggggttcgtcacaccatgatgttcagtgctactttccccaag
gaaatccagatgcttgctcgtgacttccttgatgaatacatctttctggctgttggcaga
gtaggttctacatctgagaacatcacacagaaagtagtatgggtggaagagccagacaaa
cgatcgttcctgcttgacctgctaaatgccacaggtaaagattccttgactctggtgttt
gtggaaactaaaaagggggcagatgctctcgaggacttcctgtaccacgaaggctatgcc
tgcacaagtatccacggagatcgctcccagagggacagagaggaagcactgcaccagttc
cgctctggcaagagccccattcttgttgccacagcagtagcagcaagaggattggatatc
tcaaatgtaaagcatgtcataaacttcgacttgccgagtgacattgaggagtacgtccat
cgcattggccgtacaggccgtgtaggaaaccttggtcttgccacttcattcttcaatgag
aggaacataaacattacaaaggacttgcttgatctccttgtggaggctaagcaagaagta
ccatcttggctggagaacatggcctatgagcagcatcacaaaggaggaggcagccgtggg
cgatctaagagcagtcggttcagcggaggcttcggggccagggactaccggacgagcagc
ggcttcggcagcagcagctccagcagcagccgctccaccagcagccgcagcggcggcagc
ggcagcaggggcttcggaggtggtggttatggaggcttctacaacagtgatggatatgga
ggaaactataactcccagggggtggactggtggggcaactga
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