Zonotrichia leucophrys gambelii (white-crowned sparrow): 135445378
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Entry
135445378 CDS
T09958
Symbol
DDX1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zle03041
]
135445378 (DDX1)
03016 Transfer RNA biogenesis [BR:
zle03016
]
135445378 (DDX1)
Enzymes [BR:
zle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135445378 (DDX1)
Spliceosome [BR:
zle03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
135445378 (DDX1)
Transfer RNA biogenesis [BR:
zle03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
135445378 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
135445378
NCBI-ProteinID:
XP_064563810
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All DBs
Position
3:30634511..30654400
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQMEGKKGKATIKTGGAVLNKWQMNPYDRGSAFAIGSDGLCCQSREIKEWH
GCRATRGVTKGKYYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYLDTEKGQIKFSKNGKDLGLAFEIPPHIRNQALFAACVLKNAELKF
NFGEEDFKFPPKDGYVGLCKAPEGSVVKSQHSGNAQVVQAQNLPNAPKALIVEPSRELAE
QTLNNVKQFKKYVDNPKLRELLIIGGVAARDQLSVLEQGVDIVVGTPGRLDDLVSTGKIN
LSQVRFLVLDEADGLLLQGYSDFIHRIHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKTDKLWERLGKNHIRTDEVHAKDNTRPGAN
TPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDRKGHQF
SCVCLHGDRKPQERKQNLERFKRGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAKEKEKVWYHVCSSRGKGCYNTRLKEEGGCTIWYNEMQLLG
EIEEHLNCTIAQVEPDIKVPVDDFDGKVTYGQKRALGGGLYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgttctcggaaatgggtgttatgcctgagatagctcaagcagtggaggagatg
gactggcttctccctacagatatccaagcagaatccatcccgttgatcttaggaggtggt
gatgtgcttatggctgctgaaactgggagtggaaaaactggtgctttcagcattccagtt
atccagattgtttatgaaacactgaaggaccaaatggaaggcaagaaaggaaaagccact
attaaaactggaggggcagtgctcaataaatggcaaatgaacccctatgacagaggatca
gcttttgcaattggatcggatggtttgtgttgccaaagcagagaaataaaagaatggcat
ggatgcagagcaactagaggagtgactaaagggaaatactactatgaagtatcttgtcat
gaccaaggcttgtgcagagttggttggtcaactatgcaggcgtcactagatctgggcact
gataaatttggctttggatttggtggcactggtaagaaatctcacaacaagcaatttgac
agctatggtgaggagttcactatgcatgatacaattggctgttatctagacacagaaaaa
ggacaaataaaattttccaaaaatgggaaggaccttggccttgcatttgaaatcccacca
catataaggaaccaagcactttttgcagcttgtgtactgaagaatgccgaattgaaattc
aattttggtgaagaagatttcaagtttccaccaaaagatggctatgttggcctttgcaag
gctcctgagggtagtgttgtaaaatcacaacactccggaaatgcccaagtggttcaagca
cagaaccttccaaatgctccaaaagcattgattgtagaaccatcaagagagctggcagaa
caaactttgaacaatgtgaagcagttcaaaaaatatgttgataatcccaaattaagggaa
ctgcttattattggtggagtggctgcaagagatcaactctctgtcctggaacaaggtgtg
gatattgttgttggaactcctggaaggctggatgacctggtctcaacagggaagattaat
ttatctcaagttagattcctggttctggatgaagctgatggccttctcctccaaggttat
tcagatttcatacacagaatccatagtcaaattcctcaaataacctcagatggaaagaga
cttcaggtgattgtgtgctctgcaaccttgcattcttttgatgtgaaaaaactatccgaa
aaaatcatgcattttcctacctgggtagatctgaaaggagaagattctgtccctgaaact
gtacaccatgtagttgtgcctgtaaatccaaaaactgataaactctgggaaaggctcggc
aagaatcacatcagaactgatgaagtacatgcaaaagacaatacacggcctggcgccaac
actccagaaatgtggtctgaagctattaaaattctaaaaggagaatacactgttcgagca
attaaagagcacaagatggatcaagccattatcttctgcaggactaaaatagactgtgat
aatatggagcaatacttcatccagcagggtggaggccctgataggaagggacatcagttc
tcatgtgtctgtctgcatggtgatagaaaacctcaagaaagaaagcaaaacctggaaaga
tttaagagaggagatgtccgtttcctgatctgcacagatgttgctgctagaggaattgat
attcatggtgtcccatatgttatcaacgtgacactccctgatgaaaaacagaactatgtt
catcgaatcgggagagtcggcagagctgagaggatgggtttggcaatctcccttgtggca
aaagaaaaagaaaaggtttggtatcatgtatgcagtagtcgtggaaaagggtgttataac
accaggctgaaggaagaaggaggttgtaccatatggtacaatgagatgcagttgctggga
gagattgaagaacacttaaactgcactattgcccaagttgaaccagacataaaagtacca
gtggatgattttgatgggaaggttacatatgggcagaagagagccctgggaggtggactg
tataaaggccatgtggatattctggcacctacagtgcaagagttggctgcccttgaaaag
gaggctcagacatctttcttgcatcttggctatcttcctaaccagctgttcagaacattc
tga
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