Zonotrichia leucophrys gambelii (white-crowned sparrow): 135445435
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Entry
135445435 CDS
T09958
Symbol
CDC40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135445435 (CDC40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zle03041
]
135445435 (CDC40)
Spliceosome [BR:
zle03041
]
Complex C
Other components
Step II factors
135445435 (CDC40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_C
WD40_RFWD3
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
135445435
NCBI-ProteinID:
XP_064563944
LinkDB
All DBs
Position
3:38531602..38568130
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AA seq
581 aa
AA seq
DB search
MSAAIAALASYGGSDSEPDSEPETEGGSQRSAAVLASRDAVLHLRAPPAAPPALPVDAAP
EVAVKEDVETGVHLDPAIKEVQYNPTYETMFAPEFGPENPFRTQQMAAPRNMLSGYAEPA
HINDFMFEQQRRTFATYGYALDPSVDNPEAATKYIGSVEEAEKNQGLTVFETGQRKIEKR
KKFKENDASNIDGFLGPWAKYVDEKEVAKPSEEEQKELDEITAKRQKRGKLEDDKPGEEK
TILHVKEMYDYQGRSYLHVPQDVGVNLRSTVPPEKCYLPKKQIHVWSGHTKGVSAVRLFP
LSGHIMLSCSMDCKIKLWEVYGDRRCLRTFIGHSKAVRDICFNNAGTQFLSAAYDRYLKL
WDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHL
GAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLAC
QSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDADGKLNIWDWK
TTKLYSRLKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcggctatagccgcgctcgcctcctacggcggctccgactcggagcccgactcg
gagcccgagaccgagggcggctcccagcgctccgccgctgtgctcgccagccgcgatgcc
gtgctgcacctccgggcgccgcccgccgcgcccccggccctgccggtcgacgcggccccg
gaagtagccgtgaaggaagatgtggaaacaggagtccaccttgatcctgctatcaaggaa
gttcaatacaatcccacttatgaaaccatgtttgcacctgagtttggaccagaaaaccca
tttaggactcagcaaatggctgcacctagaaacatgctttctggatatgcagaaccagct
cacatcaatgatttcatgtttgaacaacaaagaagaacatttgcaacctatggttatgca
ttagatccctcggtagataaccctgaagctgctaccaaatatattggttctgtagaagaa
gctgaaaaaaatcaaggtttaacagtatttgaaacaggacagaggaaaattgaaaagagg
aagaaattcaaggagaatgatgcatctaatattgatgggtttctgggaccatgggcgaag
tatgttgatgaaaaagaagtagccaaaccatcagaagaagagcagaaggagttggatgaa
ataacagctaagaggcagaagagaggaaaactagaagatgataaacctggagaggagaag
actatattacatgttaaagaaatgtatgactatcaggggagatcttatcttcatgtccct
caagatgttggggtcaatctccgttctacagtaccacctgagaagtgctatcttccaaag
aaacaaatccatgtgtggtctgggcatacaaagggtgtcagtgcagtcagattgtttcct
ctgtctgggcatataatgttgtcttgctctatggattgcaaaattaagctgtgggaagta
tatggtgatcgaagatgtctacgaacatttattggacacagtaaagctgtccgagacatt
tgttttaacaatgcaggcactcagttccttagtgctgcatatgaccgctatctaaaactc
tgggacactgaaacagggcaatgtatttcaagattcaccaacaggaaggttccttattgt
gtcaagttcaatcctgatgaagataaacaaaatctctttgttgcggggatgtcagataag
aaaattgtacagtgggatattcgaagtggtgagattgtgcaggaatacgataggcatttg
ggagctgtgaacaccattgtgtttgtggatgaaaatagaaggtttgtgagtacatctgat
gacaagagtttaagagtctgggaatgggacattcctgtagacttcaagtacatagctgag
ccaagtatgcattccatgccagccgtgactttgtctccaaatgggaagtggttggcttgc
cagtcaatggataaccaaatcttgatttttggagctcagaacagattcagattaaacaaa
aagaaaattttcaaaggtcacatggtagctggctatgcttgtcaagtggatttttcacct
gatatgagctatgtgatatctggagatgcagatgggaaactgaacatctgggactggaag
acaacaaaactctacagcaggttaaaagcacatgacaaagtctgtatcggtgcagtgtgg
catccacacgaaacatccaaagtcatcacgtgcggctgggatggtctgattaaactgtgg
gactag
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