Zonotrichia leucophrys gambelii (white-crowned sparrow): 135445856
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Entry
135445856 CDS
T09958
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04510
Focal adhesion
zle04512
ECM-receptor interaction
zle04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135445856 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135445856 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
135445856 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zle04147
]
135445856 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
zle00536
]
135445856 (COL4A2)
Exosome [BR:
zle04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
135445856 (COL4A2)
Glycosaminoglycan binding proteins [BR:
zle00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135445856 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
135445856
NCBI-ProteinID:
XP_064565048
LinkDB
All DBs
Position
1:25211734..25354988
Genome browser
AA seq
1715 aa
AA seq
DB search
MDISQLPSARTFLCQDTGLLLILMEVVLSAVKVDAGGKKYTGPCGGRDCSGGCQCFPEKG
SRGQPGLLGSQGFTGPPGLMGIPGVQGPKGHKGERGYPGITGPKGEVGQRGVTGFPGADG
IPGHPGQPGPRGKPGHDGCNGTAGDPGDAGTPGFSGFPGSIGVQGPKGQKGEPYIVAPEI
ISRHRGEPGDSGIIGFPGPPGTLGIQGPTGPRGQRGRPGPPGPPGPPGPQGNRGLGFYGE
KGEQGSPGPPGPPGLPTRELTGVPPDKHKGERGDPGPRGEAGRPGVLLFPLQKGEEGVMG
YPGQRGLPGITGFPGLSGERGIPGYDGPPGGHGPRGSKGEPGEMGPPGPDSYFPSRIPRK
GARGDPGFPGASGLPGDRGDEGDRGLPGLPGFSDADGDKPGLPGEMGPKGEKGEIGSPAY
FAGPPGLPGKDGSPGIRGPPGPVGAPGPLFGLKGREGTPGRYGVQGFPGPRGQKGPKGEE
GDCTTCLLGEELRRGSTGPRGPPGFPGTPGQPGSKGEPGDQGPHGLPGFPGAKGYSGPAG
FPGRKGEKGDSLHITTKGTKGIRGDPGLPGIRGEDGFPGRDGLDGLPGQPGLPGDSLRGF
PGDPGYPGELGPKGFPGEAGPPGEGFPGPKGFRGPPGDQGQAGSPGSPGLPGLPGEPGQL
DCGQVIEDFPRGDGTEPIWSGAGCVRPPKGSQGRPGLPGATGAKGARGFPGDPGPMGFPG
LNGTRGDPGREGFPGPPGFTGPRGDRGPNGLPGLQGHPGLTGKSGAPGAPGPKGLPGDVF
GAAAGPRGDVGLPGFPGLKGAPGDQGVPGARGADGSPGSPGAKGDPGPQGLPGLMGLPGT
PGTRGFPGPPGNRGPDGGPGSQGPLGPPGARGEDGEQGFPGPVGLKGLSGDKGDMGHTGL
PGIRGVTGPPGISGMDGFPGDKGLKGSPGIDGFKGMTGLKGRPGIKGIKGEFGPFGAQGD
KGSQGARGFKGDRGDQGPPGEPPKLMPSMMMEVKGEKGDAGERGTKGFFGLKGSKGMPGL
PGKTGTPGSPGHPSYVAGVKGDIGAKGLTGVKGYPGPAGSPGIRGFPGTTGVRGEKGIPG
ISGHFGTPGSHGEIGDRGDTINLPGMPGLKGEVGVPGLTGIRGGVGPKGEGGDPGFPGIE
GLKGTQGVPGSVGQEGLPGLVGPPGQQGSPGTPGLTGQKGAPGWPGLPGQAGQPGFRGIS
GLHGLPGTKGLPGSPGPDGYGSAGFPGPVGDKGEAGEPSRVEGSRGPPGQKGERGVPGVP
GTFGIPGQEGFPGPPGISNISGYPGDKGSPGLDGVPGYPGPQGQPGTPAPPGSKGESGET
GRTGEIGPKGSRGDPGLSGRPGLPGFPGPKGPRGEQGVIGFMGTVGFPGDLGPIGPKGDR
GVTGFQGPPGSPGRAPDPPRLVAEQGSPGPRGSIGPQGSPGDMGPQGPPGDPGFRGSPGE
PGLQGRGGIPAPPGSRGEQGGMGFQGPVGFEGQPGRPGSPGPPGMPGRSVSMGYLLVKHS
QSDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLSRFSTMPFLYCNPGDICY
YASRNDKSYWLSTTAPLPMMPVAEEEIRPYISRCSVCEAPAVAIAVHSQEASIPHCPEGW
RSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWL
TTIDQPFQSKPSGDTLKAGLIRSHISRCQVCMKNL
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atggacatctcgcagcttcccagtgcacgtactttcctttgtcaggatacggggcttttg
ctgatcctgatggaagttgtgctgtcagccgtcaaagtggacgctggtggaaagaaatac
acaggaccatgtggaggcagagactgcagtggaggatgtcagtgtttccctgaaaaagga
agccgtggccagccaggactccttggatcacagggattcactggaccaccgggattgatg
gggatcccaggagtgcaaggtcccaaaggtcacaaaggtgaaagaggatacccaggaata
actggacccaaaggagaagtgggacaaagaggagtcactggattccccggggcagatggc
attcctggtcatccaggccagccaggaccaaggggaaaaccaggtcatgatggctgtaat
gggacagcaggtgaccctggtgatgcaggaactcctggattctctggtttccctggtagc
attggagtccaggggcccaagggccagaagggggagccgtacatagtggcgccggagatc
atcagccgacacaggggagagcctggggattcagggatcattggttttccaggacctccg
ggtacgctgggtattcaaggacctacaggtccaagaggacagcgaggaagaccaggacca
ccaggacccccagggcccccaggaccacaaggcaacaggggacttggcttctatggagaa
aaaggtgaacagggctccccaggtcctccaggtccacctgggcttcctacaagagaactg
acaggtgtcccccctgacaagcacaagggtgaaagaggagatcctggaccaagaggagaa
gctggacgtccaggtgttcttctctttcctctccaaaaaggtgaagaaggggtaatgggc
tacccaggacaaaggggactgcctggcatcactggttttccaggactcagtggagaaaga
ggtattccaggatatgatggtccacctggtggccatggtcccagaggaagcaagggggag
cctggcgagatgggtcctccagggccagattcctatttcccttcccgcatcccgaggaaa
ggtgcaagaggtgatccaggcttcccaggcgcttctggactcccaggagacagaggagat
gagggagatcgtggattgcctggtcttcctggattttctgatgcggatggggataagcca
ggcttgcctggagaaatgggaccaaaaggtgaaaagggtgaaattggatctcctgcttat
tttgcgggaccgcctgggcttccaggcaaggatggctcacctggaattcgtggtccacct
ggtcccgttggagcccctggtcctctctttggattaaaaggacgagagggaacaccaggt
agatatggtgtgcaaggtttccctgggccaagaggacaaaaaggacctaaaggtgaagaa
ggggattgcactacatgccttttgggtgaggaactcagaaggggctctactggcccccgt
ggccctcctggctttccaggaacccctggccagcctgggagcaaaggagaacctggtgat
caaggaccgcatggtcttcctggcttccctggagcaaaaggatattcaggtccagctgga
tttcctggaaggaaaggagaaaagggagactctttacacataactacaaaaggcaccaaa
gggatccgaggagaccctgggctgcctggaatcagaggtgaggatggtttcccaggcaga
gatggattggatggtttaccaggacagcctggccttccgggtgattctctcagaggtttc
cctggtgatcctggttatccaggagaattaggcccaaagggctttccaggagaagcaggc
ccgccaggtgaaggatttcctggtccaaaaggcttccggggacctccaggtgaccaagga
caagctggaagcccaggatctccaggtctgcctggtctgccaggggagcctggccagcta
gactgtgggcaggtcattgaagactttcctagaggagatggaactgaaccaatatggtca
ggtgcaggctgtgtaaggccaccaaagggatcccaaggaaggccaggattgccaggagcc
acaggtgcaaaaggtgcaagaggattcccaggtgatccaggtccaatgggttttcctggg
ctaaatggtacacgaggtgatccaggtcgggaaggattcccaggtcctccaggtttcact
ggacccaggggagacagaggcccaaatgggctacctggactgcagggacacccaggcctt
actggaaaatctggagctccaggagcaccaggaccaaagggccttcctggtgacgttttt
ggagcagcagcagggccccgaggggatgtcggcctccctggcttcccagggctgaaaggt
gcaccaggagatcaaggagtaccaggagctagaggagcggatggtagcccaggttcgcca
ggagccaaaggagatccagggccacaaggtctccctggtttgatgggattaccaggaaca
ccaggaacacgtggattcccaggtccaccaggaaaccgtgggccagatggtggccctggc
tctcaaggacctctcggtccacctggtgctaggggagaagatggtgagcaaggttttcct
ggccccgtgggcctgaagggtctgtctggtgacaaaggtgacatgggtcacacgggactg
ccaggtatacgtggtgtgactggtcctcctggcataagtggaatggatggctttccagga
gataaaggcttgaaaggttcacccggcattgatggtttcaaaggcatgacaggcctaaaa
ggaagaccaggcatcaagggaatcaaaggagaatttggcccatttggggctcagggagat
aaaggctcacagggtgcccgtggcttcaaaggtgaccgtggggatcagggccccccagga
gagcctccaaagctcatgcccagcatgatgatggaagttaaaggtgaaaaaggagatgct
ggagaaaggggcacaaagggattctttggcttaaaaggtagcaagggaatgccaggcctt
cctggaaagacaggaaccccagggtcccctgggcatcccagctatgtggctggtgtgaaa
ggagacatcggcgcaaaagggctgacaggtgtgaaaggatatcctggtcctgctggttct
cctggcatcagaggcttccctggcaccacaggagtcaggggagaaaagggcattccagga
atttcaggccattttggtactcctggctcacatggagaaataggtgatcggggagacact
ataaacttaccaggaatgccaggcctgaaaggggaagttggtgtgccaggcttaacaggc
ataagaggaggtgtgggaccaaaaggagaaggtggtgatcctggtttccctggcattgaa
ggtctcaagggcacgcagggtgtccctggctctgtgggacaagaaggtttgccaggactg
gttggccccccagggcagcaaggaagccctggcactcctggacttacaggtcaaaaggga
gctcctggctggcctggcttaccaggacaagcaggccagcctggcttcagaggaatcagt
ggactgcatggtttaccaggcactaagggcttaccaggatcaccaggtccagatgggtac
ggctctgcaggtttcccaggtccagtgggggacaaaggagaagcaggagagccaagcaga
gtagaaggcagccgaggacctccaggccagaagggagagagaggtgttccaggagtccca
ggaacctttggtattcctgggcaggaaggatttccagggccccctgggatttcaaatata
tcaggatatcctggtgataaaggttccccaggtctagatggagtgccaggctatccagga
ccacagggccagcctggaacacctgctccaccaggaagcaaaggagaaagtggagaaaca
ggtaggactggagaaatcggcccaaaaggaagtagaggtgatcctggattatcaggaagg
cctggcctgcctggattccctggaccaaaaggtcccaggggtgagcaaggtgtcattggc
tttatgggcacggtaggatttccaggtgacctgggacccatcggacccaagggggataga
ggagtaacgggcttccagggacctccaggctctcctgggcgagcccctgatcctccaagg
ctggttgctgagcaaggttcaccaggtccccgtggaagtataggacctcagggaagccca
ggagatatgggacctcagggcccaccaggagatccaggtttcagaggctcaccaggagag
ccaggactccagggcaggggtggcattccagctcctcctggctccagaggggaacaagga
ggaatgggatttcagggtccagtgggatttgaaggccagccaggccggcctggcagccct
gggcccccaggcatgccaggccgcagtgtcagcatgggatacctgctggtgaagcacagc
cagtctgaccaagagcccatgtgcccagtgggcatgaacaaactctggagtggatacagc
ctgctgtattttgaaggacaagagaaagcacacaaccaggatctagggctggctggctcg
tgtttgtctcgctttagcaccatgccattcctctactgtaaccctggggatatttgctac
tatgcaagtcgaaatgataaatcctactggctctccactacagcacctctcccaatgatg
cccgtggcagaagaagagattaggccgtatatcagtcgctgctcagtctgtgaggcccca
gctgtggcaattgctgtccacagccaagaagcttctattcctcactgccctgaaggctgg
cgcagtttgtggatcggatattccttccttatgcacactgctgctggtgatgaaggcggg
ggacagtcgctggtttcccccgggagctgcctggaggatttcagggcgactcctttcatc
gaatgcaacggcgcccgcggaacctgccactactttgccaacaaatacagcttctggctc
accaccatcgaccagcccttccaaagcaagccctcgggagacacactcaaggcaggactc
atccgaagccacatcagcagatgtcaagtctgtatgaaaaacttatag
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