Zonotrichia leucophrys gambelii (white-crowned sparrow): 135446008
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Entry
135446008 CDS
T09958
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
135446008 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zle03400
]
135446008 (MSH2)
DNA repair and recombination proteins [BR:
zle03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
135446008 (MSH2)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
DUF6437
Motif
Other DBs
NCBI-GeneID:
135446008
NCBI-ProteinID:
XP_064565420
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All DBs
Position
3:93813724..93862238
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AA seq
936 aa
AA seq
DB search
MAVEPPREAVWPEGAGAEAGFVRAVLSLPEKPDTTVRFFERGDYYTAHGADARLAARDLF
RTRAVIRQLAGAPGTEKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKSVKENDW
YLAYKGSPGNLAQFEEVLFANNDMSTAIGVVGVKLSAADGQRVVGVGYVDTTLRKLSVCE
FPDNDQFSNLEALLVQLGPKECVLPGGDTAGEMGKLRQVIQRGGILITDRKKADFTTKDI
VQDLNRLLKSKKEEQLNSAALPEMEKQVAVSSLSAVIKFLELLSDESNFGQFELTTFDLS
QYMVLDNAAVQALNLFQSSVENANSAQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTRIE
ERLNLVEAFVMDPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMFQAINQLPNV
IQALQKHEGAHQMLLLAVFITPLNDICSDFSKFLEMIETTLDMEKVENHEFLVKASFDPN
LTELREKMNELEEKMQSLLKTAAKELGLEAGKSIKLETNSQFGHHFRVTCKEEKALRNNS
KYGIIDTQKNGVKFTNSKLSAINDEYIKNREEYEEAQDAIVKEIINIASGYAEPMQTMND
VIAQLDAIVSFAHVSNGAPVPYVRPVVLEKGRGRMVLRGARHPCIEAQDDVAFIPNDITF
EKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEITIVDCILARVGAGDS
QLKGVSTFMAEMLETASILRTATENSLIIIDELGRGTSTYDGFGLAWAISEYIASKIRGF
AMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFP
KHVIESAREKALELEEFQNIGKSKESEGEPPAKKLYREREEGEKIIQDFLCQVKALPLTD
MSEEDIKVKLKQLRNDVLAKNNSFVNEIISRTKVTS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggagccgccgcgggaggccgtgtggcccgagggcgcgggggccgaggcgggc
ttcgtgcgcgccgtgctctcgctgcccgagaagcccgacaccaccgtgcgcttcttcgag
cgcggcgactactacacggcgcacggcgcggacgcgcggctggccgcccgcgacctcttc
cgcacccgcgccgtcatccggcagctggcgggggcaccgggaactgagaagcttgagagt
gttgtgcttagtaaaatgaactttgaatcctttgtgagggacctgcttctggttcgtcat
tacagagttgaagtttacaagaacaaagcagggagcaaatctgtcaaggaaaatgactgg
tatttagcttacaagggttctccaggaaatcttgcccagtttgaggaagttctctttgcc
aacaatgacatgtccacagccattggggttgtgggggtgaagctgtctgctgctgatgga
cagagggtggtaggagtgggctatgtcgacactacactgagaaaattgagtgtttgtgag
ttcccagataatgatcagttctccaaccttgaagctctactggttcaactgggccccaag
gagtgtgtgctgccaggaggagacactgcaggggagatggggaaactcagacaggtcatt
cagaggggaggaatcctgattacagacaggaagaaggcagatttcacaacaaaagatatt
gttcaggatctcaaccgcttgttgaaatcaaagaaggaagagcaactgaacagtgcagca
ctgccagagatggaaaagcaggttgctgtttcgtctttgtcagctgttatcaagtttttg
gagttgctgtcagatgagtctaattttggacagtttgagctgactacctttgatctaagt
caatatatggttctagacaatgcagctgttcaagccctcaaccttttccagagttctgtg
gaaaatgcaaattctgcacagtctctagctggtttgctgaataaatgcagaacccctcaa
ggacaaagactggttaatcagtggatcaaacaaccacttatggacaagaccagaattgaa
gaaaggttgaatttggttgaagcttttgtgatggatccagagctacgtcagtgcctccag
gaggatctgttacgtcgctttccagacctcaaccggctggcaaagaaatttcagagacaa
gcagcaaacttacaggactgttacaggatgttccaggctatcaatcagctgcccaatgtc
atacaagcactacagaaacatgaaggagctcaccagatgttgttgttggctgtatttata
acacctcttaatgatatctgctctgacttctcaaagtttctggagatgatagaaacaaca
ttggacatggaaaaggtggagaatcatgaatttctcgttaaggcttcttttgatcctaat
ttaacagaattaagagagaagatgaatgaactggaagaaaaaatgcagtccttactaaag
actgcagccaaagaactaggtttggaagctggcaaaagtatcaagctggagacaaattca
cagtttgggcatcactttagggtaacttgtaaggaggaaaaagctcttcgtaacaattca
aaatatggaatcattgatacacagaagaatggtgtgaaatttactaacagcaaactgagt
gccatcaatgatgaatatataaagaacagggaagagtatgaagaggctcaggatgcaatt
gttaaggaaatcattaacattgcttcaggctatgcagagcccatgcagaccatgaacgac
gtgatagcgcagctggatgccattgtcagctttgcccacgtgtccaacggggccccggtg
ccgtacgtgaggcccgtggtgctggagaagggccggggcaggatggtgctgaggggggcc
cggcacccctgcatcgaggcgcaggacgacgtggccttcatccccaacgacatcaccttc
gagaagggcaagcagatgttccacatcattactggccctaacatgggggggaaatcaaca
tacatccgacagacaggggtgattgttctcatggcccagattgggtgttttgtgccctgt
gagtctgcagaaatcaccattgtggattgtatcctggctcgggtgggagcaggggacagc
cagctcaaaggagtgtccactttcatggctgagatgctggaaactgcctcaatcctcagg
acagcaactgaaaactccctgataatcattgatgagctgggaagaggaacatccacctac
gatggctttggcttggcctgggctatctcggaatacattgccagcaaaatccgtgggttt
gccatgtttgccacccacttccatgagctcacagctcttgctgaccaagtgccaacagtg
aacaacctgcatgtcactgctctgaccagcgatgacacactcaccatgctgtatcgggtc
aaggaaggtgtttgtgaccagagttttggaatacatgtagcagagttggcggctttccca
aaacatgtgatagaaagtgcaagagagaaggcactggagctggaggagtttcaaaacatt
ggcaagtccaaggaatccgaaggagaaccaccagccaagaaattatacagagaaagagag
gaaggtgaaaagataattcaggattttctctgtcaagtgaaagcattgcccttgacagat
atgtcagaagaagacatcaaagtcaagttgaagcagctgagaaatgatgtgctggcaaag
aacaacagttttgtgaatgaaataatttctcgaacgaaagttacatcatga
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