Zonotrichia leucophrys gambelii (white-crowned sparrow): 135446208
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Entry
135446208 CDS
T09958
Symbol
PRDM1
Name
(RefSeq) PR domain zinc finger protein 1 isoform X1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zle03000
]
135446208 (PRDM1)
Transcription factors [BR:
zle03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
135446208 (PRDM1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
C2CH-3rd_BIRD-IDD
Zf-C2H2_ZNF451_C
zf-C2H2_6
zf-C2H2_jaz
zf-met
zf-C2HE
B129_C2H2-zf
CapR
Motif
Other DBs
NCBI-GeneID:
135446208
NCBI-ProteinID:
XP_064565937
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All DBs
Position
3:107153669..107176105
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AA seq
822 aa
AA seq
DB search
MRIKGCFLFFQAATQCSSDAVSFKNLVKGREWTMKMDMEDADMTLWTEADFEEKCTYIVN
DHPLDPSADGGTLTQAEASLPRNLTFKYASNCKEVTGVISKEYIPKGTRFGPLVGEIYTS
DTVPKNANRKYFWRIYSSGELHHFIDGFNEDKSNWMRYVNPGYSVQEQNLAACQNGMNIY
FYTIKPIPANQELLVWYCRDFAERLHYPPSRELTMMNLTQTHVNPKQHSADKDELYQKSV
PKKEHSVKEILKMESNPPKGKDFFQTNISPVTPEKDLDDLRKNYSPERCFFPRVVYPIRP
HIPEDYLKASLAYGMDRPSYITHSPIQASTTPSPSGRSSPDQSLKSSSPHSSPGVTVSPL
APTSQEHREPYPYLNGSYGSEGLGSYPGYAPPGHLSPAFLPSYNPHYPKFLLPPFNMSCN
NLSALNNINGINNFNLFPRMYPLYGNLLSGGSLSHHMLNPTTLPSSLPSEGGRRLLQPDH
PRDFLIPAPNSAFSITGAAASMKDKPCSPTSGSPTAGTAASSEHIMQPKPTSVVLAATGG
EEAMNLIKSKRNVTGYKTLPYPLKKQNGKIKYECNVCSKTFGQLSNLKVHLRVHSGERPF
KCQTCNKGFTQLAHLQKHYLVHTGEKPHECQVCHKRFSSTSNLKTHLRLHSGEKPYQCKL
CPAKFTQFVHLKLHKRLHTRERPHKCIHCHKSYIHFCSLQVHLKGNCPVAPASGRSMEDL
NRINEEIEKFDISDNADKLEEVEDNIDLTSIVEKDILTMLRREMEGANLKVSLQRNLGNG
LISSGCNLYESSDMSVMKLPHGHPLPLLPVKVKQETIEPMDP
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgaggattaaaggctgttttctttttttccaggctgctacacagtgtagctcggacgct
gtgagtttcaagaatctggtgaaagggagagagtggacaatgaaaatggacatggaggat
gctgacatgactctgtggacagaggctgattttgaagagaagtgcacatatattgtaaat
gatcatccgctggatcccagtgccgatggaggcaccctaactcaggcagaggcttccttg
ccaaggaacttgactttcaaatatgcatctaactgcaaagaggtcactggagtgataagc
aaagagtacatcccaaaaggaacacgctttggacccctggtgggagagatctataccagt
gatacagttcccaagaatgcaaacagaaaatacttttggcggatctattcaagtggtgaa
cttcaccacttcattgatggatttaacgaggacaagagcaactggatgcgttatgtaaac
cctggctactctgttcaggagcagaacttggctgcttgtcagaatggaatgaacatctac
ttctacaccatcaagcccatccctgccaaccaagagctgcttgtgtggtactgccgagac
tttgcagagaggctgcactatcccccctccagagagctgacaatgatgaacctcacacaa
acccacgttaatccaaagcagcacagcgctgataaagatgagctttatcagaaaagcgtc
ccaaagaaggagcacagtgtgaaagaaatcctgaaaatggaatccaatcctcctaaagga
aaagacttctttcagaccaacatttcaccagttactccagaaaaagacttggatgattta
cgtaagaactatagcccggagaggtgtttcttccctcgagttgtctacccaatccgacct
cacattcctgaagactatctgaaagcttccttagcatatggcatggacagacccagctac
attactcactcacccatccaagcatctactacaccaagtccttctgggaggagcagccca
gaccaaagtttaaaaagttcaagccctcacagtagtccgggggtcacagtttcacctctg
gcaccaacttcccaagagcacagagagccatacccttacttgaacggatcatatggctca
gaaggattggggtcttatcctggatatgcacctcctggccacctctcacctgcctttcta
ccgtcctataacccccattaccccaaattcctgttaccgccattcaatatgagctgtaat
aacctgagcgctttgaacaatatcaatggcatcaacaatttcaatctcttcccaaggatg
taccctctttatggcaacctgctcagtggaggtagcctttcccaccacatgctcaacccc
accacgctccccagctcattgcccagtgaaggaggccgtcgactgctgcagcctgatcat
ccaagagacttcctcataccagcacccaacagtgccttctctatcacgggcgctgctgcc
agcatgaaggacaagccatgcagccctaccagtgggtcccccaccgctggtacagcagcc
agttcagaacacataatgcaacctaaacctacctcagtggtgttggctgccaccggcggt
gaagaagccatgaatctcattaaaagtaagaggaatgtgaccggttacaaaaccctccca
tacccactgaaaaagcagaatgggaagatcaagtacgaatgcaatgtttgctccaagacc
tttggccagctctccaatctgaaggtgcacctccgagtacacagtggagagagaccattt
aaatgccagacttgcaataagggcttcacgcagctggctcacctccagaagcactatctg
gtacatacaggagaaaaaccccatgagtgtcaggtttgtcacaagcggttcagcagcacc
agcaatctcaaaacccacctgcggctccactctggagagaagccttaccagtgcaagctc
tgcccagccaaattcacccagtttgtgcacctgaagctgcacaagcgtctccacactcga
gaacgcccccataaatgcatccactgccacaagagctacattcacttctgcagcctccag
gtccacctgaagggcaactgccccgtcgccccggcctccggccgctccatggaggacctg
aaccgaatcaacgaggagattgagaagttcgacatcagtgacaatgctgacaagctggaa
gaagtggaggacaatatcgacttaacatccatcgtggagaaggatatactgaccatgctc
aggagggaaatggaaggagctaacctgaaagtctctctgcagaggaacctgggaaatggg
cttatctcctcaggatgcaacctttacgagtcgtcagatatgtcagttatgaagttgcct
cacggtcacccactacctctgttacctgtaaaggtcaagcaagaaacaattgaaccaatg
gacccttaa
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