Zonotrichia leucophrys gambelii (white-crowned sparrow): 135446433
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Entry
135446433 CDS
T09958
Symbol
TGFBRAP1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
135446433 (TGFBRAP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zle04131
]
135446433 (TGFBRAP1)
Membrane trafficking [BR:
zle04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
135446433 (TGFBRAP1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
135446433
NCBI-ProteinID:
XP_064566232
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Position
1:29121471..29155004
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AA seq
863 aa
AA seq
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MSVKAFKLVSAVEREMLMGDKNYINIECIECCGKNLYIGTNDCFIYHFLLDEKVSTAGKI
TFAATKQLHKYLGLKKPVSELKAASALTRLLVLCDNTITLVNMINLEPVPTGARIKGAVT
FTLNENPVSGDPFCVEVCIISVKRRTIQMFMVFEDRVQIVKEVFTPEQPCAVAVDGYYLC
LALTTQYIILNYNTGVSQDLFPYCSDEKRPIVKRIGRQEFLLAGPGGLGMFATVDGISQR
APVHWSENVIGAALCFPYVVALDDEFITVHSMLDQQQKQTLPFKEGHILQDFEGKVIVAT
NKGVYILVPLPLEKQIQDLLASHRVEEALVLAKGARRNIPKEKFQVMYKRILQQAGFIQF
AQLQFLEAKELFRSGQLDVRELISLYPFLLPTSSSFIRSHPPLHEYADLNQLTQGDQEKM
TKCKRFLMSYLNEVRSTEVANGYKEDIDTALLKLYAEANHESLLDLLVSENFCLLTDSAA
WLEKHKKYFALGLLYHYNGQDAAALQLWVKIVDGDIQDSTRSDLYDYIVDFLTFCSDQEL
VWKYSEWILQKNEEVGVQIFTKRPLEEQEKNNINPDDIISCLNKYPKARVKYLEHLVLER
KIQKEKYHTHLAVLYLEAILQLKSVTTDNCTETTELLLKLRSLLQKSDLYRIRFILDKIQ
GTDLHMESAILYGKLEEHEKALHILVHELKDFHAAEEYCVWNSEGRDSQYRRRLFHLLLS
VYLAPGASDCALVVAAVDLLNNHAAEFDAGLVLQVVPDSWSVQLLSPFLAGAVRQSIHTK
RMTQVALGLAQAENLIYKHEKVKQKGAPILLSDKKVCQVCQNPFCEPVFVRYPNGSMAHT
HCAANRHLNSNVTPHSPSSSNQT
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttaaagctttcaagctcgtttctgctgttgagcgggagatgttaatgggagat
aaaaactacatcaacatcgagtgcattgagtgttgtgggaagaacctctatattggaacc
aatgactgctttatctatcacttcctgttggatgaaaaggtatccacagctggaaaaata
acttttgctgccaccaagcaactacacaaatacctgggtttgaagaagcctgtgagcgag
ttgaaagcagcctctgccctcacgagactgctcgtgctttgtgacaacacgataacacta
gtgaacatgatcaacttggaacctgtccccactggtgctaggatcaaaggagctgtgaca
ttcaccctgaatgaaaaccctgtgagtggggatcctttctgcgttgaagtttgcattatc
tcggtcaagcgccggaccattcaaatgttcatggtgtttgaagacagagtccagatagtg
aaggaagtgttcactccagagcaaccctgtgctgtggctgtagatggttactacttatgc
cttgcccttactacacagtatataattttgaattacaatactggcgtctcccaggacctg
tttccttattgcagtgatgagaaacggccaattgtgaaaagaataggcagacaagagttt
ctgttggctggccctggaggcctaggcatgtttgctactgtggatgggatttcacagcgc
gccccagtgcactggtcagagaacgtgattggggcagctctgtgctttccctacgtggtt
gctctcgatgatgagttcattacagtgcacagcatgctggaccagcagcaaaagcaaacc
ctgccctttaaagaaggtcacattctacaggactttgaaggaaaggtgattgttgctact
aacaagggtgtgtatatcttggtgccactacctttggaaaaacagattcaggatctttta
gctagccacagagtggaagaagcccttgttctagcaaaaggagctcgaaggaatattcca
aaagagaaatttcaggtaatgtacaaacgaatcctgcagcaagcaggttttatacagttt
gcacagcttcagttccttgaagcaaaagaactcttcagaagcggccagcttgatgtccgg
gagctgatctctctgtaccccttcctgttgcctacttcctcttcatttatccggtctcat
ccccctctgcacgagtacgctgacctgaaccagctgacccaaggggaccaggagaagatg
acaaaatgcaaacgattcctcatgagttacttgaatgaagtccgcagcactgaggttgca
aatggctacaaggaggatattgacactgctctactcaaactgtatgcagaggcaaatcat
gagagcctgttggatcttctagtttcagagaacttctgtcttttaacagatagtgctgcc
tggctggaaaaacacaaaaagtattttgcacttggtctcctgtatcactacaacggtcag
gatgctgcagcacttcagttatgggtgaaaatagttgatggagacattcaagattctaca
cgttcagatctctatgactacatagtggacttccttacattctgctcagaccaagagcta
gtgtggaagtactctgaatggattttacaaaaaaatgaagaggttggtgtacagattttc
actaaaaggcctttggaagaacaggagaaaaacaacattaatccagatgatatcatcagt
tgccttaacaaatatcctaaagcacgtgtcaaatatctagaacatctagtactggaaaga
aaaatacagaaagagaagtaccatactcatctagctgtcttgtacttggaggcaatactt
cagctaaaatctgtgaccacagataattgtacagaaacaactgagctgctgttgaaactt
cgcagtctgcttcagaaatctgatctttatagaattcgctttattttagacaaaatccag
ggcacagaccttcatatggagagtgcaattttatatgggaaactagaagagcacgagaag
gctttgcatatccttgtccatgagctgaaggacttccatgctgctgaggagtactgtgtg
tggaactctgagggcagggactcgcagtacaggcggaggctgttccacctgctgctgtcg
gtgtatttggcgccgggcgcctcggactgcgcgctcgtcgtggccgccgtggatctgctc
aataaccacgccgcggaattcgacgcaggcctggttttgcaggtggtgcctgacagctgg
tcagtgcagctcctctccccattcctggctggggcagtgaggcaaagcattcacacaaaa
agaatgactcaggtggcacttgggttagcacaagctgaaaacttaatctacaagcacgag
aaggttaaacaaaaaggagccccgattcttctttcagacaaaaaggtttgtcaggtgtgc
caaaatcctttctgcgagcctgtgtttgtcagataccccaatgggagcatggcccacacg
cactgtgctgcaaacagacatctcaattccaatgtgactcctcactctcccagctccagc
aatcagacttga
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