Zonotrichia leucophrys gambelii (white-crowned sparrow): 135446463
Help
Entry
135446463 CDS
T09958
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zle03019
]
135446463 (HTT)
04131 Membrane trafficking [BR:
zle04131
]
135446463 (HTT)
03029 Mitochondrial biogenesis [BR:
zle03029
]
135446463 (HTT)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
135446463 (HTT)
Membrane trafficking [BR:
zle04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
135446463 (HTT)
Mitochondrial biogenesis [BR:
zle03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
135446463 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_2
HEAT_EF3_N
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
135446463
NCBI-ProteinID:
XP_064566307
LinkDB
All DBs
Position
4:2211241..2293292
Genome browser
AA seq
3095 aa
AA seq
DB search
MATMEKLTKAFESLRSFQQQQGPAALPEEPLQRPKKELAATKKDRVNHCLTICENIVAQS
LRNSPEFQKLLGIAMELFLLCSEDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEI
KKNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAIPK
IMAAFGNFANDNEIKVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYAWLLNV
LLGLLVPVEDDRPTLLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVTRKETEISPSPEQL
VQVYELTLHYTQHQDHNVVTGALELLQQLFRTPPPELLHALTACGGIAQVSVSKDEPASR
SRSGSIVELIAGGGSSCSPVLARKHKGKVLLGEEEGLDDDSETRSDVSSASFAASVKGEI
TSELASSSGVSTAGSVGSSAADATGHDIITEQPRSQHTLQSEPVELPSCELSSAAAEGEE
EEMLSRSSSQISAVQSDATMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLEGA
EGQYSGMHIGQLQDEEDEAANILQDDSSESFRNSSLALQQSHLLKTMSHSRQPSDSSVDR
FTSKEDAADAGEHENKPSRVKGDIGHYTDRDCAPLVHCVRLLSASFLLTGDKGALVPDRD
VRVSVKALAVSCVGAAVALHPESFFSKLYKTPLEAMGEEYEEQYVSDVLNYIDHGDPQIR
GATAILCGTIVNSILIKSRFDVEKWLINVRSSTGNLFSLIDCIPLLQKTLKDESSVTCKL
ACTAVRHCIMSLCSSSYSELGLQLIVDLLALKNSSYWLVRTELLETLAEVDFRLVNFLEG
KTESLHRGIHHYTGLLKLQERVLENVVISLLGDEDPRVRHVAAASLTRLVPKLFYNCDQG
QADPVVAVARDQSSVYLKLLMHETQPPSHFAVSTITRAYRGYNMLQSPTDVTMENNLSRV
IAAISHALTISTTRALTFGCCEALCLLSTTFPVCTWSVGWHCGVSQPSSSDEAQKGCTIG
MAGLVLSLLSSAWFPLDLSAHQDALILTGNLLAASAPKCLKNPWSAEEDANQGAAKQEEP
WPALSDRALVTLVEQLFSHLLKVINICAHVMDDVAPGPAVKAALPSLTNPPSLSPIRRKG
KERESVEQASVPMSPKKSGEASPASRQTDATGPVPISKSSSVGSFYHLPSYLKLYDVLKA
THANYKVTLDLQNTNEKFGCFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFNREP
TMATVCVQQLLKTLFGTNLASQYDGSSSNPSKAQGKAQRLGSSNLRPGLYHYCFMAPYTH
FTQALADASLRNMVQAEQEHDASGWFDVLQKVSTQLKTSISSAAKHRADKNAIHNHIRLF
EPLVIKALKQYTTTTSVQLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVG
QFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPI
VHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKR
LSRQIADIILPMLAKQQMHIDSHDALGVLNTLFEILAPSSLRPVDMLLRSMFVTPKTMAS
VSTVQLWISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCQVINRLRCGENNMSTPE
DRTEVKQVKYPPEETFSRFLLQLVGILLEDIVTKQLKVDMNEQQHTFYCQELGTLLMCLI
HIFKSGMFRRITAAATRLFTGDGSDGSFYTLESLSDLVQSMIPTHPSLVLLWCHILLLVN
YTNYNWWSEVHQTPKRHSLSTTKLLSPHISGDSDESDLESKRGMCNREIVRRGALILFCD
YVCQNLHDSEHLTWLIVNHVQDLIHLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCENL
AAPTTLKKTLQCLEGIHLSQSGAVLTLYVDKLLCTPFRVLARMVDTLACRRVEMLLAATL
QNSIAQLPVEELDRIQEYLQNSGLAARHQRLYSLLDRFRLMVAPDTTSPSPLVTSHPLDG
EDQPPLENVVLDKDWYVSLVRSQCYIRSDSALLEGAELVNRIPQPDLNSFMTSKEFNLSL
LAPCLSLGMNEISREQKSSLFETARRVTLDHVSSAVQNLPANHQVFQPLLPTEPSAYWKK
LSDIFGDEVMYQSMMTLCRALAQYLLLLSKLPAGLRVPPDKEGDILKFVVMSVEALSWHL
AHDQIPLSVDLQAGLDCCCLTLQQPSLWNLLSSAAHVTYACSLINCIRFIIEAVAVEPGN
QLLSPERKNTSKPLSEGESDSNVQKTKHIIAACEMIAEMVECLQTVLSLGHKRNSSIPAF
LTPVLKNIIISLARLPLVNSYTRVPPLVWKLGWSPKPSGDFGTVFPEIPVEFLQEKEIFK
EFIYRINTLGWISRTQFEETWATLLGVLVTQPIVMDQEENQQEEDTERTQINVLAVQAIT
SLVLSAMTIPVAGNPAVSCLEQQPRNKALKALDTRFGRKLSVIRGIVEQEIQAMVSKRDN
IATHHLYQAWDPVPSLSPATTGALISHEKLLLQINTEREIGDMDYKLGQVSIHSIWLGNN
ITPLREEEWGEDEEDENDVPAPSSPPTSPINTRKHRAGVDIHSCSQFLLELYSQWILPSN
PSKRTPVILISEVVRSLLAVSDLFTERNQFEMMYTTLTELRKVHPSEDEILVQYLIPATC
KAAAVLGMDKAVAEPVSRLLESTLRSTHMPSRIGALHGILYILECDLLDETAKQLIPIIS
EYLLSNLRGVAHCVNIHNQEHILVMCAAAFYLIENYPLDVGPEFSAGIIQMCGVMVSGSD
ESTPSIIYHCVLRGLERLLLSEQLSRLDSESLVKLSVDRVNVQSPHRAMAALGLMLTCMY
TGKEKISPSRIPDANPGAPDSESVIVAMERVSVLFDRIRKGFPFEARVVARILPQFLDDF
FPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHSTGQSSMVRDWVMLSLSNFTQRT
PVAMAMWSLSCFFVSASTSQWISAILPHIISRMGKSEQVDVNIFCLVAIDFYRHQIDEEL
DRRAFQSVFEVVASPGTPYHRLLTCLQNVHKVTAC
NT seq
9288 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggaaaagctgacgaaggccttcgagtcgctgcgctccttccagcagcag
cagggccccgctgccctccccgaggagccgctccagagaccaaagaaagagcttgcagct
accaagaaagatcgggtgaatcactgtctaacaatatgtgaaaacatagttgctcagtca
ttaaggaattccccagaatttcagaagctgctgggcattgctatggagctctttctgctc
tgcagtgaggatgcagaatctgatgtccggatggttgcagatgaatgccttaataaagtt
attaaagctttgatggattccaatcttcccaggttacagttagaactctataaagagatt
aaaaagaatggtgcttcaagaagtctgcgtgctgcactctggagatttgctgagcttgcc
catctagtgcggcctcagaagtgcaggccatacctggtgaaccttttgccctgtctgaca
cggatcagtaagagacccgaggaatcggtgcaggagacgctggctgcagcaatacccaaa
atcatggcagcctttggcaattttgcaaatgacaatgagattaaggttttgttgaaggct
ttcatagctaatcttaagtccagttcccccactatccgtcgaacagcagcaggatcagca
gtgagcatctgccagcattcacgaagaacacagtatttttatgcctggctattgaatgtg
cttttaggcttgttggttcctgtagaagatgatcgtcctactcttttaattctgggtgtt
ttacttacactaaggtatctcatacctttgttgcaacaacaagtaaaagataccagcctg
aaaggcagttttggtgtaacaaggaaagaaacagagatttcaccttcaccagaacaactt
gtacaggtttatgaactgactctgcactatacccagcatcaggaccacaatgttgtgact
ggagctttagaattgctgcagcagctgtttagaactcccccccctgaactgctccatgcc
ctgactgcctgtgggggcattgctcaggtcagtgtatccaaagatgaacctgccagcagg
agccgcagcgggagcattgtggaacttatagctggaggggggtcttcatgcagccctgtt
cttgcaagaaagcataaaggtaaagtacttcttggtgaagaagagggcttggatgatgat
tctgaaacccgatctgatgtcagctctgcatcatttgcagcttctgtgaagggtgagata
accagtgagctggcttcttcatcaggagtgtcgacagctggctcggtggggagctcagct
gcggatgccacgggccacgacatcatcacggagcagccgcgctcgcagcacacgctgcag
tcggagcccgtggagctgcccagctgtgagctgagcagtgcagctgctgaaggggaggag
gaggaaatgctcagtcgaagctccagccagatcagtgctgtccagtcagatgccactatg
gatttgaatgatggcacgcaggcttcctcacctattagtgatagctctcagaccactaca
gaaggtccagactctgctgtaaccccttcagacagctctgaaattgttttggagggtgct
gaaggacagtattctggaatgcatattgggcagctgcaggatgaggaagatgaagctgca
aatattctccaagatgattcgtcagagtccttcagaaattcttctcttgctcttcaacag
tctcacctgctgaaaaccatgagccatagcaggcagccctctgatagcagcgtggatcga
tttacatccaaagaggatgcagcagatgctggtgaacacgagaacaagccctccagggta
aagggggacatcgggcactacactgacagagactgtgctcctttggtgcactgcgtcagg
ctgctgtcggcctccttcctgctcactggggacaaaggagctttagttcctgatagagat
gtgagagtcagtgtcaaagccttggcagtaagttgtgttggagcagctgttgcacttcac
cctgagtctttctttagcaaactgtataaaacacctctggaggcaatgggagaagagtat
gaggagcaatatgtgtcggacgttctgaactatattgaccatggggatccccagatcaga
ggagctactgccattctctgtggaacaattgtcaactccattctaattaaatcccgcttt
gatgtggaaaaatggctaataaatgtcagaagctcaacaggaaatctcttttccttaata
gattgcatacctctgttacagaaaacattgaaagatgagtcctctgttacatgcaaactg
gcttgtacagctgtgaggcattgcatcatgagcttatgcagtagcagttacagtgagcta
ggtttgcaattgattgttgacctccttgctctgaagaacagctcatattggcttgtaagg
acagaacttctggaaacacttgcagaggtagattttcggctagtcaacttcttggaagga
aaaactgagagcttgcacagaggtattcatcattatactggtctattaaagcttcaggag
agagtacttgaaaatgttgtaataagtctgcttggagatgaagatccaagagtgagacat
gtggctgcagcttcattaacgaggcttgttccaaagctgttttataactgtgatcaagga
caggctgacccagtggtggcagtggcacgagaccaaagcagtgtctacctgaaactcctc
atgcacgaaacacagcccccatctcactttgcagtgagcactatcaccagagcatacaga
ggttacaatatgctgcaaagtccaacagatgtcactatggaaaacaacctgtcaagggtt
attgcagcaatttcccatgcactgacaatatccactacaagagcacttacatttggctgc
tgtgaagctttgtgtcttctctccacaacatttccagtgtgcacttggagtgtgggatgg
cactgtggtgtttcccagccaagttcttcagacgaagctcagaagggctgcaccattggt
atggctggcttggtcctgtctctgctttcatcagcttggttcccactggacctctcagca
catcaggatgctttgattttgactggaaacttgcttgcagcaagtgctcccaagtgctta
aagaatccctggagtgctgaagaagatgcaaaccaaggtgctgcaaagcaggaggagccc
tggccagctctgtcagatcgagctctggtcactttagtagaacagctcttttctcatctg
ctcaaggtcatcaatatttgtgcccatgtgatggatgatgttgctcctggcccagcagta
aaggcagcattaccgtctctcacaaacccaccttctcttagtccgattcggagaaagggg
aaggagagggagtctgtggagcaggcatctgtgcccatgagccctaagaagagtggtgaa
gcaagtccagcttctaggcaaactgatgctacaggacctgttccaataagtaaatcatct
tcagtaggaagcttttatcatcttccatcatacctgaagttgtatgatgtcttgaaagca
acccatgctaattataaggttactttggatctccagaacacaaatgagaagtttggatgt
ttcttgcggtctgccttagatgttctctctcaaatcttggaacttgctactcttcaggac
attggaaagtgtgtagaagaaattttgggatatctaaaatcatgtttcaacagagagcca
acaatggcaacagtgtgtgtacagcagttattgaaaacattgtttgggacaaatctggct
tctcagtatgatggctcatcttcaaaccccagcaaagctcaaggcaaagctcagcgcttg
ggttcctccaacctcaggcctggcctctaccactattgcttcatggcaccctacacacac
ttcacacaggcccttgctgatgccagtctgaggaacatggtgcaggctgagcaggagcac
gatgcttcaggatggtttgatgtgctgcagaaagtttctacacagctgaaaactagcatt
tccagtgcagcaaaacatcgtgctgataagaatgctattcacaatcacattcgtttattt
gaaccccttgtcataaaagcattgaaacaatacacaacaacaacgtcggtacagctgcag
agacaagttctagacttgcttgctcaactggttcagctgcgagttaactactgtcttctg
gattcagatcaggtgtttattggatttgtgctaaagcagtttgaatacattgaagtagga
cagttcagggagtctgaagcaattattcctaatatcttctttttcctggtgttgctgtct
tatgagcgatatcattccaaacaaataattggaattcccaagatcattcagctgtgtgat
ggtatcatggccagtgggaggaaagctgttacacatgcaataccagctctgcaacccatt
gttcatgatctctttgtgttaagaggaacaaataaagctgatgctggaaaagagctggaa
actcagaaggaggttgtagtgtcaatgctgctgagacttatccagtaccaccaggtgcta
gaaatgttcatcttggtattgcagcagtgtcataaagaaaatgaagacaaatggaagaga
ttgtctcggcaaatagctgacatcattctcccaatgcttgcaaaacaacagatgcatata
gactctcatgatgctttgggagtactgaacactttgtttgaaattttggccccttcatcc
cttcgccctgtggacatgcttttaaggagcatgtttgttactcctaaaacaatggcatca
gtgagcactgtccagctgtggatttctggaattttagctatccttagagttctgatttca
cagtcaacagaagacattgttctgtcccgcatacaagagctttccttctcaccatacttg
atttcatgtcaagtaatcaacaggctgagatgtggagaaaataacatgtccacaccagag
gatcgcactgaggtcaaacaggtgaaatacccacctgaagagacattttccagattctta
ctacaactggttggcattctactggaagatattgtcaccaagcaattaaaagtggacatg
aatgagcagcagcacactttctactgccaggagctgggaacactgcttatgtgcttaata
cacatcttcaaatcagggatgtttagaagaatcacagctgcagccaccagactttttaca
ggagatggatctgatggtagtttctacacactcgaaagtctgagtgaccttgttcagtcc
atgattcccactcatccttctttagttctcctctggtgtcacattttgcttcttgtcaat
tataccaactacaactggtggtcagaagtgcatcaaaccccaaagagacacagcctttct
actacaaaattgctgagccctcatatatctggagacagtgatgaatctgacctggaatcc
aagcgtggcatgtgcaatcgtgagatagtgagaagaggagcactcattctcttctgtgac
tatgtttgtcaaaacctacatgattcagaacacctgacctggcttattgtgaatcatgtt
caagacttgattcatctgtcccatgagcctccagtgcaagattttatcagtgctgttcac
aggaattcagcagccagtggtctcttcatccaggccattcagtcacgctgtgagaatctt
gcagctcccacaaccctgaagaagaccttgcagtgcttggagggaatccacctgagccag
tcgggggcggtgctgacgctgtacgtggacaagctgctgtgcacgcccttccgcgtgctg
gcgcgcatggtggacaccctggcctgccgccgcgtggagatgctgctggcagcaactctg
cagaatagcattgctcagttaccagttgaagaactggataggattcaggagtaccttcaa
aacagtggattagcagcaagacaccagagactctactcactcctggataggtttcgtctc
atggtagctccagacacaaccagtccctcacctctggtcacctcacacccactggatgga
gaagatcaaccacctttagagaatgtagttctagacaaagactggtatgtgtccctggtg
cggtcacagtgttacatcaggtctgactcagcacttctggaaggagcagagctggtaaat
aggattcctcagcctgacctcaactccttcatgaccagcaaggaattcaacctaagcttg
ttagcaccttgtttaagccttggcatgaatgagatctcaagggagcagaagagcagcctc
tttgaaacagctcggagggtaactctggaccatgtgtcttctgctgtacaaaaccttcca
gccaaccaccaggtttttcagccactattgccaactgagccatcagcctactggaaaaaa
ctaagcgacatctttggagatgaggtgatgtatcagtctatgatgacactttgtcgtgca
ctggctcagtatttgttgttactctcaaaactaccagctggtctccgtgttcctcctgac
aaagagggtgacatcctgaaattcgtagtgatgtcagtagaggcactatcatggcattta
gcacatgaccagattccattaagtgtagatcttcaagctggtctggattgttgctgtctg
acactacagcagcctagtctctggaatttgctgtcttctgcagctcatgtgacatatgct
tgctccttaattaactgcattagattcatcatagaagcagttgctgtggaacctggtaat
caacttctgagtcctgaaagaaagaatacttcaaaacctttaagtgagggggaaagtgat
tcaaatgtacagaaaacaaaacacataattgcagcatgtgaaatgatagctgagatggtg
gaatgcttgcagactgtcttgtcactggggcacaaaagaaacagcagcatccctgcattt
ctcactcctgtcctcaagaacatcatcatcagtttagcaaggctgcctctagtgaacagc
tacaccagagtacctcccttggtctggaaattaggctggtcaccaaagccttcaggtgac
tttggcacagtttttcctgaaatcccagtagaatttcttcaagaaaaggaaatctttaag
gagttcatctaccgcattaatacacttgggtggatcagccgtactcagtttgaagagact
tgggctactttgcttggtgtgcttgtaactcagcccattgtaatggaccaggaggaaaac
cagcaagaggaggatacagagaggacccagatcaatgttctggcagtgcaagccataacc
tccctggtgctgagtgccatgaccatccctgttgcaggcaatccagctgtcagctgcttg
gagcagcagccccgcaacaaagctttaaaagctctggacacaaggtttgggaggaagcta
agtgttatcaggggaattgttgaacaggaaatccaggcaatggtgtctaagagagataat
attgctactcatcacttataccaagcttgggaccctgttccatcactttctcctgctact
acaggtgctcttatcagccatgaaaaactcttactgcagatcaatactgaacgagaaata
ggagatatggattataaattgggacaggtctctatacactctatatggttaggaaataat
atcactccactgagagaagaagagtggggtgaggatgaagaagatgagaatgatgtacct
gctccttcctcaccacctacctctcctatcaacactaggaaacaccgagctggtgtggat
atccattcttgttctcagttcctgcttgagctgtacagtcagtggatattgccatccaac
cccagcaagagaacaccagtgattctcatcagtgaagtggtgcgatcacttctggcagtg
tcagacttatttacagaaaggaatcagtttgagatgatgtacacaacactgacagagttg
agaaaggtgcatccatcagaagatgagattcttgtacagtatttgataccagctacttgt
aaagctgctgctgttcttggaatggataaagctgtggctgaaccagtaagtcgactgctg
gaatcaaccctgaggagcacccacatgccaagtcggattggagccctgcatggaattctt
tatatccttgagtgtgacttgctggatgagacagcaaagcagctcattccaattatcagc
gagtatctgctctccaatttgagaggagtagcacattgtgtgaatatccataaccaagag
cacattttggtcatgtgtgcagctgctttctatttgattgagaattacccacttgatgta
gggcctgaattctctgcaggaattatacagatgtgtggagtcatggtgtctggaagtgat
gaatcaacaccatccattatttatcactgtgtcctgagaggattggaacgactccttctt
tcagagcagctttccaggctggacagtgagtccctggttaagctgagtgttgacagggtg
aatgtgcagagcccccacagagcaatggcagccctgggattgatgctgacttgcatgtac
acaggaaaggaaaaaatcagccccagccgtatcccagatgcaaatcctggtgctcctgac
agtgaatctgtgattgttgctatggaacgagtatctgtcctttttgataggatcaggaag
ggatttccctttgaagctcgagtagtggctcggattcttccacagttccttgatgatttt
ttccccccacaagatgtaatgaacaaagtcattggggaatttctgtccaatcagcagcca
tacccacaattcatggcaacagtagtttataaggtgttccagacactgcatagcactgga
caatcctccatggtccgtgactgggtgatgctctctctctccaatttcacacaaagaaca
cctgtggcaatggcaatgtggagtctttcctgtttttttgtcagtgcttccaccagtcaa
tggatttcggcaattcttccacatattatcagcagaatggggaaatcagagcaggtggat
gttaacatcttctgtttggtggccatagacttctaccggcaccagatcgatgaggagctg
gaccggagagccttccagtcggtgtttgaggtggtggcatctcctggaaccccataccac
cgcctcctgacctgtttgcaaaatgtccacaaggtcacagcatgctga
DBGET
integrated database retrieval system
