Zonotrichia leucophrys gambelii (white-crowned sparrow): 135446729
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Entry
135446729 CDS
T09958
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
zle00536
]
135446729 (COL25A1)
Glycosaminoglycan binding proteins [BR:
zle00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135446729 (COL25A1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
135446729
NCBI-ProteinID:
XP_064567016
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Position
4:complement(28380730..28681589)
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AA seq
686 aa
AA seq
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MGGGGKEIKAAAAEGCTSTLGKSRGAAGQDGSGKPGGSGKPGLGKPGCGGDRCPRRAGPV
GSALAALLSALAAASCVYLGVRTSDLQARVAAIEGARGGFSAAAPLPPLPGFSLEQLNAM
MQEKVERLLAQKSYEHLAKIRVAREAAPECNCPPGPPGKRGKRGRRGETGPPGQPGPQGP
PGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGPRGP
PGDTGKDGPRGMPGLTGEPGKPGEQGLTGPQGPPGQKGSVGVPGVPGRDGQVGEPGLPGI
AGEKGEAGLKGDPGERGEKGDAGENGLKGDTGEKGDPGSSAAGIKGEPGESGRPGQKGEP
GLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGDRGEAGPVGKGERGEPGIPGPKGKTG
EPGSRGPKGSKGDTGERGDTGSAGPRGPPGQKGDQGATEIIDYNGNIHEALQRIATLTVT
GPPGPPGPQGLQGPKGEPGSPGVPGADGEQGPKGSKGDSGDPGMPGEKGGIGLPGLPGAN
GIKGEKGDVGLPGAQGPSMIGPPGPPGPHGPPGPMGPHGLPGPKGIDGPVGPHGPAGPKG
ERGEKGTVGDPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDIGEKGEKGFRGIKGEKGEPG
QPGLDGLDAPCQLGPDGLPMPGCWQK
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggggggcggaggaaaggaaatcaaagctgccgcagctgaagggtgtacgagcacgctg
gggaagagccgaggagccgcaggacaggatggcagcgggaagcccggcggcagcgggaag
cccggcctcgggaagcccggctgcggcggggaccgctgcccgcggcgggccgggccggtc
ggctccgcgctggccgcgctcctctcggcgctggccgcggcctcctgcgtctacctgggg
gtgcggaccagcgacctccaggccagggtcgcggccatcgaaggcgcccgagggggcttc
tctgccgccgccccgctcccgccgctgcccggcttttccttggagcagctgaacgcgatg
atgcaggagaaagtggagcgacttctcgcccagaaatcctacgagcacttggccaaaata
cgagtagcgagagaagcggctccagagtgcaactgcccaccaggtcctccagggaaaaga
ggtaagcggggaagaagaggagagactggacctcctggtcagcctggtcctcaaggccct
cctggtccaaaaggcgagaagggagatcaaggtgatcagggccctcggatggtgtttcct
aaaatcaatcatgggtttctctctgctgatcagcagctcattaaacgccgcctcattaag
ggggaccaaggacaggctggaccccctggacctccagggccaccaggacccagaggtccc
ccaggagacaccggcaaagatggtcctcgtgggatgcccggcttaacgggtgaaccagga
aaaccaggagaacaaggattgacaggacctcaggggcctccaggacaaaagggttctgtt
ggagtgcctggtgttccagggagagatggacaagtgggtgaacctggtttgcctggcata
gcaggagagaagggagaagcagggctcaagggtgaccctggagaaagaggagagaagggg
gatgctggtgagaatggactgaagggtgacacaggagaaaagggtgaccctggctcttct
gcggctggaattaagggtgaacccggtgaatctgggaggcctggacagaagggtgaacca
ggccttcctgggcttcctggactccctggaataaagggggaaccaggtttcattggtcca
caaggagaacctgggttgccagggctgccaggaacaaagggtgacagaggagaggcgggc
cctgttgggaagggtgagcgaggggaacctggaatccctggaccaaaggggaaaacaggt
gaacctggatctagaggccccaaagggtcaaagggtgatacaggtgagagaggtgacaca
ggatctgcaggtccacggggaccacctggacagaagggtgatcaaggtgcaacagagata
attgattataatggcaatatccatgaagctctgcagcggattgccaccctgactgtcacg
ggaccaccaggaccaccaggaccccaagggctgcaagggccaaagggtgaaccaggatcc
ccaggagttccaggagctgatggagagcagggtcctaagggctcaaaaggagactcaggt
gatcctggaatgcccggagaaaagggaggaattggactgcctggcctaccaggagccaat
ggcatcaaaggtgaaaaaggagacgttggtttgcctggtgcccaaggtccttcaatgata
ggaccacctggaccaccagggccacatggtcctccaggccccatgggacctcatggactg
cctggccctaagggcatagatggcccagttggtccccatggccctgcaggtcccaaagga
gagagaggtgagaagggaactgtaggtgaccctggacccagaggaccatatggcttgcct
ggcaaagacggcgagcctggccttgatggtttccctggtcctcgaggagaaaagggtgat
ataggagaaaagggagaaaagggattccgtggaattaagggggaaaaaggggagccaggc
cagcctggcctggatgggctggatgccccttgccaattgggtcctgatggattaccaatg
cctggctgttggcaaaagtga
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