Zonotrichia leucophrys gambelii (white-crowned sparrow): 135446883
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Entry
135446883 CDS
T09958
Symbol
NUP54
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135446883 (NUP54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zle03019
]
135446883 (NUP54)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
135446883 (NUP54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
XhlA
Motif
Other DBs
NCBI-GeneID:
135446883
NCBI-ProteinID:
XP_064567432
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All DBs
Position
4:42788439..42800603
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AA seq
574 aa
AA seq
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MVMEKCFSFSLLGPAFHSELMLPCSFSASRSSGFGGLETANSTASGFNFGGFGLTANPAV
NFNIGNFGVSTTSTPAFNFGNSLASAGAFGGFGTTTTSAAPAFSFSAPTNTGTGGLFGGT
QNKGFGFGTSFGTGTGTGLGSGLGTGLGFGGFGTQQQQQQQQQTTLGTGLFNQPAQTPAQ
SNQLINTASALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNNNIAPVEFTQENPFCRF
KAVGYSLMPNNKDEDGLVVLVFNRKEADIRSQQQQLVESLHKILGGNQTLTVNVEGVKTM
PDDQTEVIIYIVERSPNGTSRRVPATTLYAHFEQANIKSSLQQLGVSLSMARTELSPAQV
KQLLQNPPAGVDPIIWEQAKVDNPDPDKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDI
ISEDISELQKNQTTTMAKIAQYKRKLMALSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQ
LDTIQCELNAPTQFKGRLNELMSQIRMQNHFGAVRAEERYYIDADLLREIKQHLKQQQEG
LSHLISIIKDDLEDIKLIEHGLNESIPIRGGVFS
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggtgatggaaaaatgcttcagcttttctctcctgggacctgcctttcactcagaacta
atgttgccttgctctttttctgcttcccgctcgtcaggatttggtgggcttgaaactgca
aactccactgccagtgggtttaattttgggggtttcggattaactgctaatcccgcggtg
aattttaatattgggaatttcggtgtttccactacctcaactccagctttcaattttggt
aacagtctggcaagcgcaggtgccttcggaggctttgggaccaccaccaccagcgcggca
ccggcgttcagcttctctgctcccaccaacactggcaccggcggactctttggtggtacc
cagaacaaaggctttggatttggtaccagttttggcacaggaactggaactggcttgggc
agtgggttgggaactgggctaggctttggaggctttggaacccagcagcagcagcagcag
cagcagcagaccacattaggcactgggttgttcaaccagcctgcccagacccccgctcag
tccaaccagctcatcaacacagccagcgccctctcggccccgacactgctgggagatgag
agggatgccattctggccaaatggaaccagctccaggccttctggggcacgggcaaaggg
tacttcaacaacaacatcgctccggtggagttcacgcaggaaaaccccttctgcaggttt
aaggctgtgggttacagtttaatgcccaacaacaaagatgaagatggcctcgtggtcctg
gtgtttaacagaaaagaagcagatattcgaagccagcagcagcagctcgtagaatcgcta
cacaaaattttgggaggaaaccagaccctcactgtcaatgtcgaaggtgttaaaacaatg
cctgatgaccagacagaagtgatcatttacattgtggagcgctcccccaacggcacctcc
aggagagttcctgcaacgaccctctatgcccacttcgagcaagccaacatcaaatcatcc
ctgcagcagctgggggtcagcctgtccatggccaggacagagctgtccccagcacaagtc
aagcagctcctgcagaaccctcctgccggtgttgatcctattatatgggaacaagccaaa
gttgataatcctgatcctgataagcttattcctgtgccaatggtgggtttcaaggaactg
ctgagaagattgaaggtccaggatcagatgaccaaacagcatcaaactcgattagatata
atatcagaagatatcagtgagctgcagaaaaaccaaacgacgactatggcaaaaattgca
caatacaaaaggaaactgatggcgctttcacacagaaccttgcaggtgctaataaagcag
gagatccaaaggaaaagtggttatgccattcaggcagatgaggagcagcttcgtgtacag
ttggatacaattcagtgtgaacttaacgcacccacgcagttcaagggcagactgaatgag
ctcatgtcccagatcaggatgcaaaaccactttggagcagtgcgggctgaagagcgctat
tacatagatgcagacctcttaagggaaatcaagcaacacctgaagcagcagcaagaaggg
ctgagtcacctaatcagcatcatcaaagatgatttggaggacatcaagctaatagaacac
gggttaaacgagagcattcccatccgagggggagtcttcagttga
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