Zonotrichia leucophrys gambelii (white-crowned sparrow): 135447136
Help
Entry
135447136 CDS
T09958
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
135447136 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zle03021
]
135447136 (POLR1A)
Enzymes [BR:
zle01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
135447136 (POLR1A)
Transcription machinery [BR:
zle03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
135447136 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box
Motif
Other DBs
NCBI-GeneID:
135447136
NCBI-ProteinID:
XP_064568046
LinkDB
All DBs
Position
4:complement(66374006..66409771)
Genome browser
AA seq
1708 aa
AA seq
DB search
MKPPKVVPWRRLVGVSFGMYTAEEIRKLSVKAITNPQYLDNVGNPAVNGLYDLALGPPDS
REVCATCMQNFSNCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLNCHMLTCPRAVVHLL
LSQLKVLQKGLLHAVHELEIILNRFIEQCADATGSEIEEELNRHVQEMLQSAQTRDRCSN
VKNVCECRNKLVSEFWKAHMASKKCPNCKSRRSLVRKEHNSKLTVTYPSTVYPKSGQEGI
LDETAGIDESQLGKRGYLTPMTAKEYILALWKNEGFFLRYLFPGMDPHESSEFSPDMFFL
DLLVVPPSRYRPVNRLGDRLFTNGQTVNLQAVMKDAQLIRKLLVFMAKEQCQPIKITEEI
QTETGEDSEPLDRSVLTTIPGQSIADKLYNAWIRLQSHVNIVFDSDMDKLITDKYPGIRQ
LLEKKEGLFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKE
LRQAVINGPKVHPGASMVINEDGSHTVLSATSLSQREAIAKQLLTPSSGAPQAGLKIVCR
HIRNGDVLLLNRQPTLHRPSIQAHRARILPAEKVLRLHYANCKAYNADFDGDEMNAHFPQ
SELGRAEAYTLAITDKQYLVPKDGKPLPGLIQDHMVSGVSMTLRGCFFTREQYMELVYRG
LTDKKGRIQTFPPAIVKPQPLWTGKQVVSTLLINIIPDNHAPLNLTGKAKIGGKAWVKGP
AKGYLNLDSMCESQVIIRDGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLTCLG
RLFTAYLQLYRGFTMGIEDILVKRDADHKRKKIIERSRQSGIEAVRAALNLPETASCEEV
QGKWQDAHLCKDQRDFNMVDMKFKEEVNNYNNEVNKVCMPLGLHRSFPENNLQLMVQSGA
KGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPS
EFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGED
GLDIPKTQFLQPEQFPFIAENYEVIQKRNHLDEALARMESHQANQQFKAIKKWRARHQNS
VQREGGFLLFSQKKLASLKAQLPGGEIKNGRDPATLQLLKMWYELDEKKQRKYLKKTNKC
PDPSLGVWRPDTYFASVSETFEKGVEGYISKWESENSRSYMHTALSSARLKDLLYLKWQR
SLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTP
MMSVPVLNTKKALKKVKHLKKLLTRVCLAEVLEKVDIEESLHVKHKLNKHRLYKIRFHFL
PHECYREEKCVKPRQILHFMETRFFKVLLEAIKRKTTKMASFNEVSTRKTTRKDLDDEQD
KTLNSLEAVAEEEENIVDAEADEGDGDATETKRRKNQEEEVDYESEEENGEENVNENPED
EEAESEKEEGTSGAEEDQNRAEGEDSQHLSFVSQTKKGKDQLLKSAEVRVSAVVESHPSI
QDYTFDTESELWCEVSLALPLTKVYFDVSSLLAALARSTVIHEVKGIARCLLNEGTSKEG
HKEFVLQTEGINLAELFKYSDILDLNRLYCNDIHSMAKNYGIESALRVIIKEIKDVFAVY
GIVVDPRHLSLVADYMCFEGIYKPLNRIGIQSNSSPLQQMTFETSYKFLKDATMMGAHDE
LRSPSACLVVGKVVKGGTGLFDLKQPLT
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgcccaaagtggtgccatggcggcggcttgttggagtgtccttcgggatgtac
acggccgaggagatcaggaagctgagtgtgaaggccatcaccaaccctcagtacctggac
aatgtgggcaatccagctgtgaacgggctctacgacctggccctggggccgccggactcc
agagaagtgtgtgccacctgcatgcagaacttcagcaactgccccgggcacttcggccac
atagagctgcctctgcctgtctacaaccccctgttctttgataaattgtaccttctgatc
agagggtcctgtttgaattgccacatgctgacgtgtccccgagccgtggttcacctgctg
ctgagccagctgaaggtgctgcagaaagggctgctgcatgctgtccatgagctcgaaatc
atcctgaacaggtttatagagcagtgtgcagatgcaacaggctcagaaattgaggaggag
ttgaatcgccacgtgcaggaaatgttacagagtgcccagacaagggatcggtgctcaaat
gtcaaaaatgtgtgtgagtgtagaaataaactggtatcagagttctggaaagcacacatg
gcttcaaagaaatgcccaaactgcaaatccaggagatcactggtgcgaaaggagcacaac
agcaagctgacagtcacctatccttccacagtgtaccctaagtcaggacaggaaggcatt
ctggatgaaacagcaggtattgatgaaagccagttagggaagagaggttacctgacacca
atgactgccaaggaatacatcctggctctgtggaagaatgaaggtttctttctgcgttat
ctcttccctgggatggatccccatgagagttcagaattcagtccagacatgttttttcta
gatctgcttgtggttccaccttcaaggtaccgtcctgtgaatcgcctcggagatcgcctg
ttcaccaacgggcagactgtgaacctgcaggctgtcatgaaagatgcccagctgataagg
aagctcttggttttcatggccaaagaacagtgtcagccaataaagatcacagaagaaatt
caaacagagacaggagaggatagtgaacctctggaccgttctgtgctgacaacaattcca
ggacagagcattgcagataagctgtacaacgcctggatacgcctccagagccatgtcaac
attgtgtttgatagtgacatggacaagctgataacagacaaataccctgggattcgtcag
ctgttggagaagaaggaggggctgttccgcaagcacatgatggggaagcgcgtggatttc
gctgcccgctccgtcatctgccccgacatgtacattgggaccaacgagattggcatcccc
atggtgtttgccaccaaactgacctaccctcagccagtcaccccctggaacgtcaaggag
ctgaggcaggctgtcatcaatggccccaaggtgcaccctggggcctccatggtcatcaac
gaggacggctcgcacacggtgctgagcgccaccagcctgagccagcgcgaggccatcgcc
aagcagctcctcaccccctcctcaggggcgccccaggcaggcctgaagattgtgtgccgg
cacatcaggaacggggacgtgctgctgctgaaccggcagcccacgctgcaccggccgtcc
atccaggcgcaccgcgcgcgcatcctgcccgccgagaaggtgctgcggctgcactacgcc
aactgcaaggcctacaacgctgacttcgacggcgatgagatgaacgcccacttccctcag
agcgagctgggcagggcagaggcctacaccctggccatcactgataaacagtacctggtg
ccaaaggatgggaagcctcttcctggcctgatccaggaccacatggtttctggggtcagc
atgacactgcggggctgctttttcaccagggagcagtacatggagctggtgtaccgaggg
ctgacagacaaaaaagggagaattcaaacctttcctccagccattgtgaagccacagcca
ttgtggacaggaaagcaggttgtttccacattgttaataaacatcattccagacaaccat
gctccactgaacttgactgggaaagcaaaaattggtgggaaagcctgggtaaagggacct
gcaaaaggatatctgaatcttgattcaatgtgtgaatctcaggttatcatcagagatggg
gaattgctgtgtggagtcctggacaaagctcactttggcagctcagcctacgggctggtg
cactgctgctatgagatctatgggggtgagaccagtgggaaggtgctgacgtgtctgggg
cgcctcttcactgcttacctgcagctctacaggggcttcaccatggggattgaagatatt
ttggttaaacgtgatgcagaccacaaaagaaaaaaaatcattgaaaggtcaaggcagagt
ggtattgaagctgttagagctgctcttaatttgccagaaacagcatcatgtgaggaggtg
caagggaagtggcaggatgcccatctctgcaaagaccagagggattttaacatggttgat
atgaaattcaaggaggaagtgaacaattacaacaatgaagtcaacaaggtttgcatgccc
cttggtctccacaggagctttccagagaacaatttgcagttgatggtacagtcaggagcc
aaaggatccactgtgaacacaatgcagatttcttgtttgctgggtcagattgagctggaa
ggccgaagacccccactgatggcatctggcaaatcactgccatgtttccagccctatgac
ttttcccctagctcaggaggatttgtgactggcagatttctcactggcatcaaaccttct
gaattcttctttcactgcatggctggcagggaaggtcttgtggacacagctgtcaaaacc
agccgttctgggtacctgcaaaggtgtatcataaaacatttggaagggctggtggttcag
tatgacctgactgtacgagacagtgatggcagcgtggtgcagtttctgtatggagaagat
gggcttgatatccctaaaactcagttcttacagcctgagcagttccctttcattgcagaa
aactatgaggtaatccagaagagaaaccatctggatgaggctttagcaaggatggagtct
caccaagctaaccagcagttcaaagccatcaaaaagtggcgagccagacaccaaaactct
gtgcaaagagaaggaggctttctgttgttttcccaaaagaaattggcaagtttgaaagca
cagcttccaggaggtgaaataaagaatggaagagatcctgctactttacagttgttgaag
atgtggtatgagcttgatgagaagaagcaaaggaagtacctgaagaagacaaacaagtgt
cctgacccaagcctgggggtttggcgcccagatacttattttgcatcagtttcagaaaca
tttgagaagggagttgaaggctatatcagtaaatgggaatctgagaacagccggagctac
atgcacacagcactttcttctgctaggttaaaggatctgttgtatttaaagtggcagcgt
tctctctgtgacccaggagaggctgtggggcttcttgctgctcagagcattggggaacct
tcaacacagatgactctgaacacctttcactttgctggcagaggtgaaatgaatgtcaca
ctgggtattccaaggttgagggaaatactgatggtggccagctcaaacattaaaacacca
atgatgagtgttcctgtgctgaataccaagaaagctctcaaaaaggtgaaacaccttaag
aaactgctcacaagagtgtgcttggctgaggtcctggagaaagtggacattgaggagtcc
ctgcatgtgaagcacaagctgaacaagcatcgcctctacaaaatcagattccatttcttg
ccccatgaatgttaccgggaggagaagtgtgtgaagcccaggcagatcttgcacttcatg
gaaacaaggttttttaaagttcttctggaagcaattaaaaggaagactacaaagatggca
tcttttaatgaagtcagcactcggaagacaactcggaaggatttagatgatgagcaagac
aagaccctgaacagtctggaagctgtagcagaggaagaagagaacattgttgatgcagaa
gctgatgaaggggatggtgatgctacagaaacaaaacggaggaagaaccaggaggaggag
gttgattatgagagtgaagaagagaacggggaagaaaacgtgaatgagaatccagaagat
gaagaggctgaatctgaaaaagaagaagggacttctggtgctgaagaggatcagaacaga
gcagagggtgaagattctcagcacctttcctttgtgtctcagactaaaaaagggaaagat
cagttgctgaagtcagcggaggtgcgagtgagcgctgttgtggagagccacccatccata
caggattacaccttcgacactgagagtgagctttggtgtgaggtttccctggccctgcct
ctgaccaaggtgtactttgacgtgtcgtcgctgctggcggcgctggcgcgcagcacggtg
atccacgaggtgaagggcatcgcgcgctgcctgctcaatgagggcaccagcaaggaggga
cacaaggagtttgttctccagacagaagggatcaacctggcagagctcttcaaatactct
gatattttggacctgaacagactttattgcaatgatatccattccatggctaagaattat
ggaattgaatcagccctgagggtgattataaaggaaataaaagatgtatttgctgtatat
ggaattgtggtagaccctcgacacctttcacttgtggcagactacatgtgttttgaagga
atttacaaaccactgaatcgcattggaattcagtccaactcctcccctctgcagcagatg
acatttgaaaccagctacaaattcttgaaggatgcaacaatgatgggtgcccacgatgag
ctgcgctccccttcggcctgcctggtggttgggaaggttgtcaaaggagggactggcttg
tttgacctcaagcagcccctgacatag
DBGET
integrated database retrieval system
