Zonotrichia leucophrys gambelii (white-crowned sparrow): 135447998
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Entry
135447998 CDS
T09958
Symbol
TBC1D4
Name
(RefSeq) TBC1 domain family member 4 isoform X1
KO
K17902
TBC1 domain family member 4
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zle04131
]
135447998 (TBC1D4)
Membrane trafficking [BR:
zle04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
135447998 (TBC1D4)
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
135447998 (TBC1D4)
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Rab associated proteins
135447998 (TBC1D4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RabGAP-TBC
RabGap-TBC_2
DUF3350
PID
Laminin_I
DUF4249
Motif
Other DBs
NCBI-GeneID:
135447998
NCBI-ProteinID:
XP_064569427
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All DBs
Position
1:50453811..50557533
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AA seq
1289 aa
AA seq
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MEKRGEGEPLSHPLEPEPEPEPQPAPPGEKRFRLWYVGSSCLDRRTTLPMLPWLVAEIRR
RGQRQEPCGAPGSGVPAREVLLLLGSPTLRCVPAGPGPAAAGPGRPASPAPAVFIFEHKA
QHIARFIHNSHDLTYFAYLIKAQPDNPDSPMACHVFRATDPNQVPDVISSIRQVSKAALK
EDAKPSKDSEDAFYDSQKFEVLYCGKVTVAHKKAPSTLIDDCIEKFSLHERQRLKLLNEQ
RNNESSLDLPLCEENVPASPLDSPFEELDSPNSPPTAGRAAMFTIGSQTNLTNLASTRGC
FPERILEDSGFDEQQEFRSRCSSVTAVMQRRVHDTNLKTQSRRRHASAPSHVQPSDSEKN
RTMLFQVGRFEVNLISPDTKSVVFEKNFKDISSCSQGIKHVDHFGFICRESVESGLSQYI
CYVFQCANESLVDEVMLTLKQAFSTAAALQNAKTQIKLCEACPMHSLHKLCERIEGLYPP
RAKLVIQRHLSSLTDNEQADIFERVQKMKPENDQEENELVILHLRQLCETKQKTHIHIGE
APSVISNSAIPESTTSGGRFKLDILKNKAKKSLTSSLENIFSRGANRMRGRLGSVDSFER
CSSLAPDRDTSPGDSPPATPPASPVSSAWQTFPEEGSDSPQFRRRAHTFSHPPSSARRRI
TFQNGRSQSARSPLLRQNGLEAPSPVVGLRRALSESESASPGLPSSLSAPSFLKTIYQGS
GRLLQHPESDLSKSDGEGKKRTSTFCSSESLNAAGATLTPRRISWRRRIFLQVASPMNKS
PSKMQHPDGHDGCELLPLSPLAPPLEEDPLVLVLQNEDGPDKTGERKNSEELQSLWRKAI
HQQILLLRMEKENQKLEASRDELQSRKVKLDYDEVGTCQKDAINIWDKKLLNCRAKIRCD
MEDIHSTLKEGVPKSRRGEIWQFLAVQHRVRHRLPNKQQPPDISYKELLKQLTAQQHAIL
VDLGRTFPTHPYFSTHLGAGQLSLFNLLKAYSLLDKEVGYCQGISFVAGVLLLHMSEEQA
FEMLKFLMYDLGFRKQYRPDMMSLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPW
FLTLFASQFSLGFVARVFDIIFLQGTEVIFKVALSLLSSQETSIMGCESFENIVDYLKTT
IPDMTKPQMEKIITQVFEMDISKQLHAYEVEYHVLQDELQENVSPCDEGEPLEKLERANN
HLKRQNMDLLEKLQVAHAKIQSLEASLETVLTRENKMKTAIQSLEQEKITYQKTLEQIVK
YLPAEVLSDCELLLKEVNYNPNNKIWSKP
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atggagaagcgaggggagggcgagccgctctcccaccccctggagcccgagcccgagccc
gagccgcagccggcgccgccgggggagaagcgcttcaggttgtggtacgtgggctcgtcg
tgcctggataggcggaccacgctgcccatgctaccgtggctggtggccgagatccgccgc
cgcggccagcggcaggagccctgcggcgccccgggcagcggggtgccggcccgcgaggtg
ctgctgctgctgggctcgcccacgctgcgctgcgtgcccgccggccccggccccgccgcc
gccggccccggccgccccgccagccccgcgcccgccgtcttcatcttcgagcacaaggcg
cagcacatcgcccgcttcatccacaacagccacgacctcacctacttcgcctacctgatc
aaggcgcagcccgacaaccctgactcccccatggcctgccacgtcttccgggccaccgac
cccaaccaggttcctgatgtcatcagcagcataagacaagtctctaaagcagcactgaaa
gaagatgccaaaccaagtaaggacagtgaagatgccttctatgactctcaaaaatttgag
gtcttgtactgtgggaaggtgacagtggctcacaagaaagctccctccacactgattgac
gactgcatagagaaattcagccttcacgagcgccagcgcctgaaactgctaaacgagcag
cgcaataacgagtcgagtttggacctgcccctgtgtgaggaaaatgtgccagcttctcct
ctggacagcccttttgaggagctggacagccccaacagccccccaacagcagggcgtgct
gcaatgtttacaattggcagccagaccaacctgaccaacctggccagcactcgtggctgc
tttccagagaggattttggaggactctggcttcgatgagcagcaggagttccgctcccgc
tgcagcagcgtcaccgcagtgatgcagaggagggttcacgacaccaacctgaaaacacag
tcccgcaggagacacgccagtgctcccagccacgtccagccctctgactccgagaagaac
aggacaatgctgttccaggttggaaggtttgaagttaacctcatcagcccagataccaaa
tctgttgtgtttgaaaagaattttaaagatatctcctcatgttctcagggtataaaacac
gttgatcactttggttttatttgccgagaatctgtggaatctgggttaagccagtatatt
tgctatgtgttccagtgtgcaaatgagtctctggttgatgaggtaatgctgaccctgaag
caagccttcagcactgctgcagccctgcaaaatgccaagacacagatcaaattgtgtgag
gcctgccctatgcattcattgcacaaactctgtgaaagaattgaaggactctatccacca
agagccaaacttgtaattcagagacatctgtcatcgctgactgacaatgagcaagcagac
attttcgaacgtgttcagaaaatgaagcctgaaaatgaccaggaagaaaatgaacttgtg
atcttacacctccgtcagctctgtgagactaagcagaaaacacacatccacattggtgaa
gcgccgtcggtcatttctaacagtgcaattccagaaagcaccaccagtggtggccggttt
aaacttgacattctgaaaaacaaggcaaagaaatccttgactagctctctggaaaatatc
ttctcaaggggagccaacaggatgcgagggcgcctgggaagcgtggacagctttgagcgc
tgcagcagcctggcccctgacagagacacttctccgggcgattccccgccagcgactcct
ccagcgtcccccgtgtcctcggcctggcagacgtttcccgaggaaggctcggactctccc
cagttcaggaggcgcgcgcacaccttcagccacccgcccagcagcgcccgacgcaggatc
accttccagaacggcaggtcccagagcgcccgctccccgctgctgcgccagaacggcctg
gaggcacccagtcctgtggtcgggcttcggcgcgctctcagtgagagtgaatctgcgtca
cctggtctcccctcctctctctctgccccttctttcctgaaaaccatttaccagggctca
ggaaggttgctccagcacccagaaagtgacctctccaagagtgatggggagggaaagaaa
agaacatcaaccttctgcagcagtgaatctctaaatgctgcaggggccacgctcacacct
cgccgcatctcctggcggcggagaatattcctgcaggtagcttcacctatgaataaatct
ccttccaagatgcagcatccagatggtcatgatggatgtgaattgttacctttatcccct
cttgctccacccctggaggaagaccctcttgttctagtattgcaaaatgaggatggtcca
gataaaactggagagaggaaaaactcagaagaactacaaagtctgtggagaaaagccatc
catcaacaaattctgttacttcgaatggaaaaagaaaaccagaagctggaagcaagcaga
gatgagctccaatcaagaaaagtaaaactggactatgatgaagttggcacatgtcagaaa
gatgccataaatatttgggataagaagttactaaactgcagagccaaaatccgatgtgac
atggaagatattcattccactttaaaagaaggtgtaccaaaaagtcgtcggggagaaatt
tggcaatttttggctgtgcaacaccgggtcaggcacaggctgccaaacaagcagcagcct
cctgacatctcttacaaagaacttctgaaacagctgactgctcaacagcatgctatcctt
gtagatctaggacggacattccctacacatccttacttttccacacacctgggagcagga
cagctatcactgtttaacctcttgaaagcctattctttgctggacaaagaagttggttat
tgtcaaggtataagttttgtagctggagtgctgcttctacatatgagtgaagagcaggcc
tttgaaatgctgaaattcctcatgtatgaccttggcttccgtaaacagtacagaccagac
atgatgtccctacagattcagatgtatcagctctcaaggcttctgcatgattatcacaga
gacctgtataatcatcttgaagagaatgaaatcagtcccagtctttatgctgcaccgtgg
tttcttacgctgttcgcatctcaattttcattaggatttgtagccagagtgtttgacatt
atttttcttcaaggaacagaagtcatatttaaagtagcactgagtctacttagcagtcaa
gaaacatctataatgggatgtgagagttttgagaacattgttgattatcttaaaaccact
attccagatatgactaaacctcaaatggaaaaaattattactcaggtgtttgagatggat
atttcaaaacagctccatgcctatgaagtagagtaccatgttcttcaggatgaactgcag
gaaaatgtgagtccctgtgatgaaggtgaacctctggagaagctggagagggcaaacaat
catctgaagaggcaaaacatggatttattggagaagctacaggttgctcacgctaaaatt
cagagtctggaagccagcctggagactgttttgacacgagagaataaaatgaagactgca
attcagtccctggaacaggagaagataacatatcaaaagactcttgagcagatagtgaag
tatttgccagcagaagtgttgtctgactgtgaactgctcctgaaggaagtaaactacaac
ccaaataataaaatatggagtaagccataa
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