Zonotrichia leucophrys gambelii (white-crowned sparrow): 135448042
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Entry
135448042 CDS
T09958
Symbol
DIS3
Name
(RefSeq) exosome complex exonuclease RRP44
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135448042 (DIS3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zle03019
]
135448042 (DIS3)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
135448042 (DIS3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
CSD2
OB_HELZ2
Toxin_R_bind_C
Dis3l2_C_term
Motif
Other DBs
NCBI-GeneID:
135448042
NCBI-ProteinID:
XP_064569525
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All DBs
Position
1:51472639..51491614
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AA seq
964 aa
AA seq
DB search
MLTSRTFVKRTRAGAVVKVVREHYLRDDIACGAAACRLCPPAPPGTGAGSAPGLEARPSG
PASSLCPGPHFLLPDTNLLLHQIDILEDPVIKNVIVLQTVLQEVRNRSAPVYKRIRDVIQ
NKEKHFYSFTNEHHRETYIEQNRGETANDRNDRAIRVAVKWYNEHLKKIEDEEKIQVIFL
TNDRINKEKALEEGITAYTCEEYIKSLTANPELVDRLACVSDEGKEIEGGKIIFPEHIPL
SKLQQGIKSGIYLQGTYRANRENYLEATVWVHGDAEENKEIIVQGLKHLNRAIHEDVVAV
ELLAKDEWVAPSSVVLQDDGQNEENIENEEEKENILKTSVSKDMLRPTGRVVGIIKRNWR
PYCGMLSKSQIKEARRHLFTPADRRIPRIRIETRQADTLEGQRIIVAIDGWPRNSRYPNG
HFVKNLGSAGDKETETEVLLLEHDVPHQAFSQAVLSFLPKMPWSITEEDMKHREDLRHLT
VCSVDPPGCTDIDDALHCREIGNGNLEVGVHIADVSHFIRPGNALDEESVKRGTTVYLCE
KRIDMVPELLSSNLCSLRSNVDRLAFSCIWEMNHKAEILKTRFTKSVINSKASLTYAEAQ
MRIDSATMNDDITTSLRGLNKLAKILKKKRIDKGALTLASPEVRFHMDSETHDPIDLQTK
ELKETNSMVEEFMLLANISVAQKIYDEFPEFALLRKHPAPPPSNYDILVKAAKSKNLEIK
TDSAKALAESLDKAESPTFPYLNTLLRILTTRCMMQAVYFCSGMDNDFHHYGLASPIYTH
FTSPIRRYADIIVHRLLAVAIGADSTYPELTDKHKLAEMCKNLNYRHKMAQYAQRASVAF
HTQLFFKTKGVVNEDAYILFVRKNAVVVLIPKYGLEGTVFFEEKDKPTPKLEYNSEVPSL
TVEDTTLHMFDKVKVNIMLDDSNIQHQKMRMVLVEPKILGNDTHASLSAEASSKEEPEKK
KKKL
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgctgacctcgcggacgttcgtgaagcgcacgcgggcgggcgcggtggtgaaggtggtg
cgcgagcattacctgcgcgacgacatcgcgtgcggcgccgccgcgtgccgcctctgcccc
cccgccccgcccggcaccggcgccgggagcgcgcccgggctggaggcgcggcccagcggc
cccgccagcagcctctgccccgggccgcacttcctcctgcccgacaccaacctgctcctg
caccagattgatatccttgaagatcctgttattaagaatgtcattgtgctgcagacagtc
ctgcaagaagtcaggaatcggagtgcgccggtgtacaagcgaattagggacgtgattcaa
aacaaagaaaaacatttctattctttcaccaatgagcatcacagagagacgtacatagag
cagaatcggggagaaactgccaatgaccgcaatgacagagccattcgggtagcagtgaaa
tggtacaatgagcacttgaagaaaatagaggatgaggaaaagattcaagttatcttttta
acaaatgacagaattaataaagagaaagctctggaggaaggaataactgcttatacatgt
gaggagtatataaaaagcttgacagctaatcctgagcttgtagatcgtcttgcctgtgta
tctgatgaagggaaagaaatagaaggtggaaaaataatattcccagaacatattcctctt
agcaaattgcagcaaggaataaaatctggtatttacctccaaggaacttacagggcaaac
agagagaattatcttgaagctactgtttgggttcatggagatgctgaagaaaacaaagag
ataattgtacagggcctgaaacatttaaaccgagcaattcatgaagatgttgtagccgtg
gagctgttggcaaaagatgaatgggtggcaccatcctcagtggttctgcaggacgacggc
cagaatgaagagaacattgaaaatgaagaagagaaagaaaacattctgaagacttccgtt
agcaaggacatgctgaggcccacgggaagagtcgtgggcattataaaacgcaactggcga
ccgtattgtgggatgctttccaagtcacagatcaaagaggcaaggcgccatttgtttaca
ccagctgatcgcagaattcctcgcattcgaatagaaaccagacaggcagatacattggaa
gggcaaagaataattgttgctattgatggttggcccaggaattccaggtatcctaatggt
cattttgtaaagaatttgggaagcgctggagataaagagacagagacagaagttctcctg
cttgaacatgatgtccctcaccaggctttttcccaggctgtccttagtttcctaccaaaa
atgccatggagcattacagaagaggatatgaaacacagggaggacttaaggcatctgact
gtttgtagtgttgatccacctggttgtacagatattgacgatgcattacattgtagagaa
ataggaaatggaaatctagaggtcggtgtacatattgcggatgtcagtcattttattcgc
ccaggaaatgctttggatgaggagtcagtaaaaagaggaacaacagtgtatctgtgtgaa
aaaagaattgatatggtaccagagctacttagttccaacttgtgctctctgagatctaat
gtggacaggcttgcattttcatgcatatgggaaatgaatcataaggctgaaattctgaaa
accagatttacaaagagtgttataaattccaaggcttctcttacatatgctgaagcgcag
atgagaatcgattcggcaactatgaatgatgatattactaccagcttacgtggactaaac
aaattagcaaaaatcctgaagaagaaaagaattgataaaggagccttgacacttgcgtca
ccagaagttcgtttccacatggacagtgaaactcatgatcctattgatctgcagactaag
gagctgaaagagacaaattccatggttgaagagttcatgttgcttgccaatatttctgta
gcacaaaaaatttatgatgagttcccagagtttgccttgctccggaaacatcctgctcct
cccccatcaaattacgacatccttgtaaaggctgcaaagtccaagaatttggaaattaag
acagattcagcaaaagctttagctgaatcattagacaaagctgaatctcctacattcccc
tacctaaacacattgctgcgaattttgaccactcgctgcatgatgcaagctgtttatttc
tgctctggaatggataatgattttcatcactatggtttagcctcacctatttatactcac
tttacctcacctattagaaggtatgctgatatcatagtgcaccggcttctggcagtggcc
ataggagcagacagtacttacccagagctcacagataaacacaaactggcagagatgtgt
aaaaatctcaattaccgacataaaatggcacaatatgcacaaagagcctctgtggcattc
catacacagctcttcttcaaaaccaagggagtagtcaatgaagatgcatatatattattt
gtaagaaaaaatgcagttgtggttctgattcccaagtatgggttagaaggaacagtcttc
tttgaagaaaaagataaaccaacaccaaaactggagtacaacagtgaggtgccatcactt
accgtggaagacacaacattacatatgtttgataaagttaaagtgaacatcatgctagat
gattccaacatccaacatcagaaaatgaggatggtcttggtagaacccaagatattagga
aatgatacacatgcaagtctctctgcagaggcaagcagcaaggaggagccagagaaaaag
aaaaagaagctatga
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