Zonotrichia leucophrys gambelii (white-crowned sparrow): 135448046
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Entry
135448046 CDS
T09958
Symbol
HIF1A
Name
(RefSeq) hypoxia-inducible factor 1-alpha
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04137
Mitophagy - animal
zle04140
Autophagy - animal
zle04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
135448046 (HIF1A)
04137 Mitophagy - animal
135448046 (HIF1A)
04148 Efferocytosis
135448046 (HIF1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zle03000
]
135448046 (HIF1A)
Transcription factors [BR:
zle03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
135448046 (HIF1A)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
PAS
HIF-1
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
135448046
NCBI-ProteinID:
XP_064569526
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All DBs
Position
5:1086213..1117852
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AA seq
817 aa
AA seq
DB search
MDSPGGVTDKKRISSERRKEKSRDAARCRRSKESEVFYELAHQLPLPHTVSAHLDKASIM
RLTISYLRMRKLLDAGELETEAKMEKELNCFYLKALDGFVMVLSEDGDMIYMSENVNKCM
GLTQFELTGHSVFDFTHPCDHEELREMLTHRNGPVKKGKEQNTERSFFLRMKCTLTSRGR
TVNIKSATWKVLHCTGHIRVYDTCGNQTHCGYKKPPMTCLVLICEPIPHPSNIEVPLDSK
TFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQV
TTGQYRMLAKQGGYVWVETQATVIYNTKNSQPQCIVCVNYVLSGIVQKDLIFSLGQTECM
LKPVESPDMKMTKIFSKDDLDDTNSLFEKLKQEPDALTVLAPAAGDTIISLDFSSNESDE
QQCDEVPLYNDVMLPSSSEKLQNINMAMSPLPASETTKPLRSNADPALNREVVSKLEPNT
EPLELSFTMPQVQEQPTSPSDASTSQSSPEPSSPNDYCFDVDNDMASEFKLELVEKLFAI
DTEAKNPFSTQETDLDLEMLAPYIPMDDDFQLRSFDQLSPLESSSSSSSQSAGSSIPLFQ
QQQQGQAGGASPEEVKLKPAEHGDEVKPIVVPSSPPRGGPEPGSAPASPYAGSRSRTASP
IRAGKGTVEQGEKPSPGAPSLLTVTLNERSTALDEELNPKMLALHNAQRKRKMEHDGSLF
QAVGIGSLFQQTGDRGGNASLAWKRVKGCKTNGHSGVEQKTIILLSTDIASKLLGQSMDE
SGLPQLTSYDCEVNAPIQGNRNLLQGEELLRALDQVN
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atggacagccccggcggcgtcaccgacaagaagaggattagctcagaacggaggaaagag
aagtctcgggacgcagcgcggtgcaggaggagcaaggagtcggaggtgttctatgagctg
gctcaccagctgcccctgccccacactgtcagtgcccacctggacaaggcctccatcatg
aggctcaccatcagctacctgcgcatgaggaagctgctggatgctggtgagctggagaca
gaagccaaaatggagaaggaactgaactgtttctacttgaaagctcttgatggctttgtc
atggttctgtctgaagatggggacatgatttacatgtctgaaaacgtgaacaagtgtatg
ggactcactcagtttgagttgacggggcacagtgtatttgatttcactcatccatgtgac
cacgaggagctgagagaaatgcttacacacagaaatggtcctgtgaaaaagggcaaagag
cagaacacggagcgcagcttttttctcagaatgaagtgcacactgactagcaggggaaga
acagtgaatataaagtctgctacatggaaggtgctgcactgcactggccacatccgtgtg
tacgacacgtgtgggaaccagacccactgtggctacaaaaagcctcccatgacctgcctg
gtgttgatctgtgaacctattcctcacccatcaaacattgaggtccccctggacagtaaa
acgttcctcagtcgtcacagtctggatatgaaattttcctattgtgatgaaagaattaca
gagttgatggggtatgagccagaggagctcctgggtcgctcaatctatgagtactatcac
gcactggattctgatcatctgaccaaaacacaccatgacatgttcacaaaagggcaggtg
acaacaggacagtacagaatgctggccaaacaaggtggctatgtctgggttgaaactcaa
gcaactgttatatacaacactaagaattctcagccacagtgcatagtgtgtgtgaactat
gtgttgagtggaattgttcagaaggacttaattttttccctgggacaaactgagtgtatg
ctgaaaccagtggagtctcctgacatgaaaatgaccaaaatattcagtaaagatgacctg
gatgataccaacagcctatttgaaaaacttaaacaggaaccagatgctttaactgtgcta
gccccagctgctggagacacaattatctctctagatttcagcagtaatgagtctgatgaa
caacaatgtgatgaagttcctttgtataacgatgtaatgctcccctcatccagtgagaaa
ttgcagaatataaatatggcaatgtccccactacctgcctctgaaactacaaagccactt
cgtagcaatgctgatcctgcactcaatagagaagttgtatcaaagctggagccaaacaca
gagccactcgaactttcttttaccatgcctcaggtgcaagaacaaccaaccagcccttct
gatgcaagtaccagccaaagttcacctgagcccagtagtcccaacgactactgctttgat
gtggataatgatatggccagtgaattcaaactggaattagtggagaaactctttgccata
gatacagaagcaaaaaatccattctctactcaggaaaccgatttagatttagagatgttg
gctccttacatccccatggacgacgacttccagctgcgctccttcgatcagctgtccccg
ctggagagcagcagctcctccagctcacagagtgcaggcagcagcatccccctgttccag
cagcagcagcagggccaggcaggcggggccagccccgaggaggtgaagctgaagccagca
gagcacggggatgaggtgaagccgatcgtggtcccctcctcgcccccgcgcgggggcccc
gagcccggcagcgcccccgcctcgccctacgcggggagcaggagtcgaactgcctcgccc
atcagggcagggaagggcacggtggagcagggggaaaagccttctccaggagcacccagc
ttgctaacagtcactctcaatgaaagatctactgcactggatgaagaactaaatccaaag
atgctagctttgcataatgctcagagaaaacgaaaaatggaacatgatggttcacttttt
caggcagttggaattgggtctttattccagcagacaggtgaccgtggaggaaatgcatca
cttgcttggaaacgtgtaaagggatgcaaaacaaatggtcacagtggagtggagcaaaag
acaatcattctactatcaactgacatagcaagtaaacttctagggcagtcgatggatgag
agtggactcccccaactcacgagttacgactgcgaagtaaacgctcccatacagggcaac
agaaacctgctacagggggaagaactgctcagagctctggatcaagttaactga
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