Zonotrichia leucophrys gambelii (white-crowned sparrow): 135448057
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Entry
135448057 CDS
T09958
Symbol
NRDE2
Name
(RefSeq) nuclear exosome regulator NRDE2
KO
K26109
nuclear exosome regulator NRDE2
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zle03019
]
135448057 (NRDE2)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
135448057 (NRDE2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
Suf
HAT_PRP39_C
TAF1D
Motif
Other DBs
NCBI-GeneID:
135448057
NCBI-ProteinID:
XP_064569553
LinkDB
All DBs
Position
5:11982355..12010580
Genome browser
AA seq
1168 aa
AA seq
DB search
MALFPAFAGAAQPGEPPAGSSEGSSRELDWLSNPSFSAEDALLLHQRSTEVANLIPEKSP
LIRTSSRSELSEESDTDESLKQTSKKRKKKKKKHHHSKKAKKKTKGDSSSSESEVDTKHI
KDRGSGKSSEKEAAANLGKKASGVASSHSIWLDDIQEPRADAFRIDKKPDPANWAYKSLY
RGDIARYKRKGDSCLGIDAKKQCITWDSCASKRKQAQSRPERYFTKNNVKMLNTDGILVC
NKNSPSDPPAFIPVSQVETDDSSDTTEVNPLGIYDPSTTVWLQGKGCKSADSESVNTQQT
VQEPGISMNSVLMTKVEEYNKKVRENPRDINAWMEFIAFQDELMRGPSPYASTGEQELRR
KSLKLVLEKKLAILERAIESNPSNVDLKLARLKLCTEFWEPPAVIKEWQKLIFLHPNNPE
MWKKYLLFCQSQFTTFSVSKINSLYGKCLTTLAAVQDGSMVSHPLLPGTEEAMLAIFIQQ
CHFLRQAGHSEKAVSLFQALIDFTFFKPDSVKDLPTRGQVEFFEPFWDSGEPRIGEKGAR
GWKAWMHQQEKGGWVVLKPDDEDEEDIDEDQEIKDKTLPKWHIWLDIEHSREARHWLPWR
PDKTKKETEEDCEDPERQVLFDDLGPSLIRLSNPKLQHQLLYSFLQFLGVPCTSKLFPSS
LYIAMDENNIFDSVLYDDKPLTSVDFPLSGFNSIGHMDTMARGRHQIGHYREGEEFIQNV
FQVLSQIFTGKEKSNLAICWLQYEISKVIQCLQAKKKKKLKAQGRKSKKLAKNFLKAPDN
RNNLSLWKLYAYLEWLLGNTDDSRKVFDTALCTAGTGGLKSAQLCSLSLLYAQLEVELLE
SLEGAVTSRAVHILTKLTENGPFVPYSGQVSPVNVLKARKTYEHALQDYLSQAADSDQGQ
ANDTDQLVNLVGCYALFQYLTVGIDAAVLIYTQASEKLEVSGSQKCENTGENFGILNFPT
ALEAVTLLHTNLLRFHMKISVYPLNPLREALAEALKRYPSNLSLWRSYIHIQRKSHCASK
ARRFFDSVTRSTNSLEPWLFAIQAEQMRKKLTEKVQRAEVGEIHCTIPETGLTNRIVALF
EHAVQSENGTHCPLLWRMYLNFMASLGKKEKSKGLFYKALQNCPWAKVLYMDAVEYFPED
LQETLDLMTEKELRVRVPMEELDLLLEI
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgttcccggccttcgccggggccgcccagccaggggagccccccgccggcagc
tccgagggctcctcgagagagttagactggcttagtaacccaagcttctctgcagaagat
gcactattgctgcaccagcgctccacagaagttgccaatctcattcctgaaaaatcacca
ttaataaggacttcttccagatctgagttgtctgaggagagtgatacagatgagagcctg
aaacagacaagtaagaaaaggaaaaagaaaaagaaaaagcatcaccacagtaagaaggca
aagaagaaaaccaaaggggattccagtagcagcgaatcagaagtggacactaagcacatc
aaggacagaggaagtggcaaaagtagtgaaaaggaagcagcagcaaacctaggtaagaaa
gcatcaggtgttgccagcagtcactctatttggcttgatgacatccaggagcccagagca
gacgccttccgcatagacaagaaaccagaccctgcaaactgggcctacaaatccttgtat
cgaggggacatagcaaggtataaaagaaaaggagactcctgtcttggcatagatgcaaag
aagcagtgcataacctgggacagttgtgcatcaaaaaggaagcaagcacagagtcggcct
gagcgctactttacaaagaacaatgtgaagatgctgaacacagatgggattcttgtctgt
aataaaaattctccatctgatccacctgcttttataccagtttcccaagtggaaactgat
gattcttctgacacaacagaagtaaatcctcttgggatttatgatccatcaaccacagtg
tggctacaaggaaaagggtgcaagagtgcagacagtgagtctgtaaatacacagcaaaca
gttcaagagcctgggataagcatgaactctgttctaatgacaaaagtggaagaatataac
aagaaagttagagaaaacccaagagatattaatgcttggatggaatttattgcctttcag
gatgaattaatgagaggacctagcccttatgccagtacgggagagcaggaattaaggaga
aaatcactcaagttagtcttggaaaagaaactggccattttagagagggcaattgaaagc
aatccaagtaatgttgatctgaaacttgccaggctgaagctgtgcacagaattctgggaa
ccaccagctgtgatcaaagaatggcagaagctaatatttttacatcccaataatccagag
atgtggaagaaataccttctgttctgtcaaagtcagttcactaccttttctgtttcaaag
atcaacagcctctatgggaaatgtttgacaacactggcagctgtgcaggatggcagcatg
gtgtcccaccctctgctgcctggcactgaagaagctatgctggctatatttattcagcaa
tgccacttcctgagacaggctggtcattctgagaaagcagtgtctttgtttcaggctctg
attgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaaggggacaggtg
gaattctttgaacccttttgggatagtggagaaccacgaattggagaaaaaggagcaaga
ggctggaaagcatggatgcaccaacaagaaaagggtggctgggttgttcttaagcctgat
gatgaagatgaggaagacatagatgaagatcaagaaataaaagataaaactcttcccaag
tggcatatttggttggatattgaacattcccgggaggcaaggcactggttaccttggagg
ccagacaaaaccaaaaaggaaactgaagaagattgtgaagatccagaaagacaggtgtta
tttgatgatcttggaccatctttaatccgtctttctaatccaaagcttcaacaccaactc
ctgtactcttttttgcaattcctgggagttccatgtacaagtaaactctttccttccagt
ctctatattgccatggatgaaaataacatctttgacagtgtgctttatgatgataaacca
ctgacttctgttgattttccactttctggattcaacagtattggtcatatggatacaatg
gcacgagggagacatcagataggccactacagagaaggggaggagttcatacagaatgtc
ttccaagttctgtcccagatatttacaggaaaggaaaaatctaacctggccatttgttgg
ctacagtatgaaatatctaaggtaattcagtgtctccaagcaaaaaagaaaaagaagcta
aaagcacaagggaggaaaagtaaaaaattggccaagaattttcttaaagcacctgacaac
cgaaacaacctttctctctggaagctctatgcctacctggagtggctgcttgggaacaca
gatgattccaggaaggtgtttgacacagctctgtgcacagcagggacaggaggactgaag
agtgctcagctctgcagcctcagcctgctctatgctcagctggaagtggagctgctggaa
agcctggagggagctgtcacctctcgtgctgttcatatattgaccaaattgactgaaaac
ggaccctttgtgccctatagtggacaagtgtcacctgtcaatgtcttgaaagctcgtaaa
acatatgagcatgcactgcaagattatttaagtcaagcagcagattctgatcagggtcag
gccaatgatactgatcagctggttaacctggttggttgctatgcactgtttcagtatttg
actgttgggattgatgctgcagtattaatatatacgcaggcttcagaaaaacttgaagtt
tctggttcacagaaatgtgaaaatacaggagagaattttggcattctaaattttcccact
gctcttgaagctgtcacactgctgcatacaaatttactgagattccacatgaaaattagt
gtttatcctttgaatcccctgcgagaggcactggcagaggctctgaaacggtatcctagc
aacctttccctttggaggtcgtacatccacatccaaaggaagtctcactgtgccagcaaa
gcacgaagattttttgatagtgtcacaaggtctactaactctttagagccatggctgttt
gcaatccaagcagagcagatgagaaaaaagctcacagagaaggtccagagggcagaggtt
ggtgaaatacattgcactattcctgaaactggattaacaaatcggattgtggctctgttt
gaacatgcagttcagagtgaaaatggtacccactgtccactgctgtggagaatgtatttg
aactttatggcttcactgggaaaaaaagaaaaaagtaaaggattgttttataaagctctt
caaaactgtccttgggcaaaggtgctgtacatggatgcagtggagtatttccccgaggac
ctgcaggagacgctcgatctgatgactgagaaggagctgagggtgcgggtgcccatggaa
gagctggatctactactggagatttaa
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