Zonotrichia leucophrys gambelii (white-crowned sparrow): 135448112
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Entry
135448112 CDS
T09958
Symbol
PCDH20
Name
(RefSeq) protocadherin-20 isoform X1
KO
K16498
protocadherin delta 1
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
135448112 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zle01009
]
135448112 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
zle04515
]
135448112 (PCDH20)
Protein phosphatases and associated proteins [BR:
zle01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
135448112 (PCDH20)
Cell adhesion molecules [BR:
zle04515
]
Cadherins
Protocadherins
135448112 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
SGBP_BT4661-like
Motif
Other DBs
NCBI-GeneID:
135448112
NCBI-ProteinID:
XP_064569722
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All DBs
Position
1:56461590..56467747
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AA seq
915 aa
AA seq
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MGPPGGRGSSGARGSLQHLLLFLLFVGPFNCFASYSRATELFYSLNEGLPAGVLIGSLAR
DLRLPTAGSQQAASLQPPLSFTLASHGLGGQYVQLDNRSGELHTSAVEIDREALCVESSG
ATIFGGSAAVSSSSPSPESCLLLLDVLVLPQEYFRLVKVKIAIRDVNDNAPRFPVPHIRL
WVPENAPVNTRLAIEHPALDPDMGTNGVQTYRLRDNYGVFTLDVEENENGERTPYLIVMG
TLDRETQDEYVTVIVAEDGGTPPLVGSATLTIGISDINDNCPQFNDSQLNVTLYGNSSLG
THVATVHAVDMDLGSNAQITYSYSQKVPQPSRDLFHLNESTGAITLSTKVDGDTPRLHRL
IILGNGPGCIPAVITVLVTIIKVMMRPPEVVPRFIANEVEGVVYLKELEPINTPIAFFTI
KDPDEKYKVSCYLDGDGPFRLSPYKPYNNEYLLETTKPLDFETQQLYEISVVAWNSEGFH
VKKVVKVQVLDDNDNSPVFSEQLIELSIEENNVPNAFLTKLHATDADSGERGQVSYFLGP
DAPSYFALDKTTGVLTVSTQLDREEKEKYRYTVKAVDSGFPPRESIATVTITVLDKNDNS
PRFINKDFSFFVPENFPGFGEIGVISVTDADAGQNGWVALSVLNGSDIFVIDTGKGVLRA
KVSLDREQQSSYVLWIEAVDGGDPALSSTAKITILLLDINDNPPLVLFPQSNMSYLLVLP
STLPGSPITEVYAVDKDTGMNAVIAYSIIGRRGPRPESFRIDPKTGNITLEESLMQNDYG
LYRLLVKVSDHGYPEPLHSTVMVNLFVNDTVSNESYIESLLRKEPDISVEEKQPQISIEP
THKKMESASCMPTLVALSIISLSSIALVTGMGIYICLRKGKKHHRADENLEVQIPLNGRI
NLHMLEKKPVEISNI
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggggcccccgggcggtcgcggcagctccggcgcccgcggcagcctgcagcacttgctc
ctcttcctgctcttcgttgggcctttcaactgctttgccagttacagccgcgccactgag
ctcttctacagcctcaacgaggggctgcctgctggggtgctcatcggcagcctggcccgt
gacctgcggcttccaacggctggcagccagcaagcggcgtctctgcagcccccactctcc
ttcaccctggcctcccatggcttggggggacagtatgtgcagctggacaaccgctccgga
gagctgcacacctcagcggtggagatagaccgggaagctctatgcgtggaaagcagtggg
gccaccatcttcgggggatcagctgctgtctcctcttcgtccccctcaccagagtcatgc
ctactgctgctggatgtgctggtactgccgcaggagtactttcgcctggtgaaggtaaaa
attgctatccgtgatgtcaacgacaacgcgccccgcttccctgtgccccacatccgcctc
tgggtgcctgagaatgcacctgtgaacacccgcctggccatcgagcaccccgccctcgac
cctgacatgggcaccaatggtgtccagacctaccgcctgcgagataactatggtgtcttc
accctggatgtggaggagaatgagaatggggagaggactccctacctgattgttatgggg
acactggacagggagacgcaggacgagtatgtgacagtcatcgtcgctgaggatgggggg
actcctccgctcgtgggcagcgccaccctcactattggcatcagtgacatcaatgacaac
tgcccccagttcaatgactcgcagctcaacgtcactctctatgggaattccagcctaggg
acacacgtggctactgtccacgctgtggacatggaccttggatccaatgcccagatcacg
tactcctacagccagaaggtcccccagccatccagagacttgttccatttgaatgaaagc
acaggagccatcacactctccactaaggttgatggggacactccaaggctgcacaggctg
atcatactgggcaacggtcctggctgtattcctgccgtgatcacggtgctggtgaccatc
atcaaagtcatgatgaggccccctgaagttgttcctcgtttcatagctaatgaggtggaa
ggggtggtctacttaaaggaacttgagcctatcaacacacccatagcattttttaccatc
aaagaccccgatgaaaagtacaaagtcagttgctatttggacggtgacgggcctttcagg
ctttcaccgtacaagccatacaacaatgaatacctgttggagaccacgaagcctttggac
tttgagacacagcagctgtatgaaatctctgtagttgcatggaactctgaaggatttcat
gtcaagaaagttgtcaaagtacaggttctggatgacaatgacaattcaccagttttctct
gaacagctaatagaattgtccattgaggagaacaatgttcccaatgcttttttgaccaaa
ctgcatgctactgatgctgacagtggagaaagagggcaagtgtcctatttcttaggtcct
gatgccccttcttattttgctttagataaaactacaggagttcttacagtttctacccag
ctggacagagaagaaaaagagaaatacagatatactgtcaaagcagtagattctggattc
cctccaagagaatcaatagcaactgtcaccatcactgtattggataaaaatgataacagt
ccaagatttatcaataaggatttcagcttttttgtgccagaaaactttccaggctttggt
gaaattggagttataagtgtcacagatgctgatgcagggcaaaatggatgggttgccctt
tcagttctgaacggaagtgatatttttgttatagatactggaaaaggagttttgagagct
aaagtctccctggacagggagcagcaaagctcctacgttctgtggattgaagcagttgat
ggcggtgatcctgccctgtcttctacagcaaaaataactatccttcttctggacataaat
gacaaccctcctttggtcttgttccctcagtctaatatgtcttacttgttagtcctcccc
tctacccttcctggctctcccatcactgaggtctatgctgtcgataaggacaccggcatg
aatgcagtcatagcttacagtatcataggaaggagaggccctcgacccgagtcgtttagg
attgaccccaaaactggtaacatcaccttggaagagtcactgatgcagaatgactatggc
ctctatcggctgctcgtgaaagtcagtgaccacggctacccggagcctctccactccacc
gtcatggtgaacctttttgtcaatgacaccgtcagcaatgagagctacattgagagcttg
ttaaggaaggagcctgatatcagtgtagaggaaaagcagccacaaatatccatagagcct
acacataaaaaaatggagtcagcatcctgcatgcctaccttggtagctctttcaataata
agcttgagttcgattgctttagtaacggggatgggaatttacatttgtctgagaaaaggg
aaaaagcatcacagagcagatgaaaacttggaagtacaaatccccttaaatggaagaatt
aacctgcacatgttggagaagaaaccagtggagatttctaatatctga
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