Zonotrichia leucophrys gambelii (white-crowned sparrow): 135448334
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Entry
135448334 CDS
T09958
Symbol
DDB2
Name
(RefSeq) DNA damage-binding protein 2 isoform X1
KO
K10140
DNA damage-binding protein 2
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03420
Nucleotide excision repair
zle04115
p53 signaling pathway
zle04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
135448334 (DDB2)
09124 Replication and repair
03420 Nucleotide excision repair
135448334 (DDB2)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
135448334 (DDB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zle04121
]
135448334 (DDB2)
03400 DNA repair and recombination proteins [BR:
zle03400
]
135448334 (DDB2)
Ubiquitin system [BR:
zle04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
135448334 (DDB2)
DNA repair and recombination proteins [BR:
zle03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
135448334 (DDB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_EIPR1
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
EIF3I
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_NUP159_NUP214
WD40_RFWD3
Beta-prop_Vps41
PEP5_VPS11_N
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Frtz
Motif
Other DBs
NCBI-GeneID:
135448334
NCBI-ProteinID:
XP_064570295
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All DBs
Position
5:34020712..34034989
Genome browser
AA seq
468 aa
AA seq
DB search
MAPVNQPKDKKRERACQHWPEEAKSAGKKKRDYGERGNEKQEKKLFVRKTSKPSGKIGNI
SSGCSGGGFVMRNKRVLPSQLERRCSIVHYVYQKMLGGSIQAQLRQRLELAFLRSLSSYC
LFRRASPFDRRVTCLEWHPTHPSTLAVGSKGGDIILWDCEVLAKTCFIKGKGPGDSLGDI
KFSPYEAEKLYVASGDGTLSLQDLEGRAVQVISRALDCGHEHHNVCCWYCSVDVSASWNT
VVTGDNVGNVVLLSTSGEEIWKLKLHKKKVTHVEFNSRCEWMFATASVDQTVKIWDLRNI
KNKTNFLHLLPHEKPVNAAYFSPTHGAKLLSTDQHNEIRVYSSSDWTKPQHLIPHPHRQF
QHLTPIKATWHPRYELIVVGRYPDPKFPGYTLNELRTVDVFDGNTGDMVCQLYDPNASGI
ISLNKFNPMGDTLASGMGFNILIWNQEEMAAKKHELLLKAMTNEEIEP
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atggctccagtgaaccagccaaaggacaagaagcgtgagagggcatgtcagcattggcca
gaagaggcaaaatcagctgggaagaagaaacgggactatggagaacgagggaatgagaaa
caagaaaagaagttgtttgtgagaaaaacatctaaaccctccgggaaaattggtaacatt
tcttcaggttgcagtggaggtgggtttgtgatgagaaacaagagagtccttccctctcag
ctggagcggcgatgcagcattgttcattatgtctaccagaaaatgctgggaggctccatt
caggcacagctcaggcagagattggagctggcttttctgcgttctctttcctcatactgt
ctctttcgaagagcaagtccctttgacaggagagtgacatgtctggaatggcacccaaca
catcccagtacgctagctgttggttccaaaggtggagacatcatcctttgggactgtgaa
gtacttgctaaaacctgcttcataaaggggaaagggccaggagattctctcggagacatc
aagttcagtccttatgaggcagagaagctttatgtggcatcaggtgatggcaccctaagt
ctgcaggatcttgagggcagagcggtgcaggtgatctctcgtgccctggactgtggccat
gagcatcataatgtttgttgctggtactgcagtgtggacgtttctgcaagctggaatacc
gtggtgacaggtgataatgtgggcaacgtggtcctgctcagcacttctggtgaagagatc
tggaagctgaaattgcacaagaagaaagtgactcatgtagagtttaactcccgatgtgag
tggatgtttgccacagcatctgtggatcagacagtcaaaatctgggacctcagaaacatc
aaaaacaaaacaaactttcttcatctgcttccacatgagaaacctgtcaatgcagcttac
ttcagcccaacacatggtgccaagcttctgagcacagaccagcacaatgaaatcagggtt
tactcatcttcagactggaccaagccacagcatctgattccacatccacataggcagttt
cagcacctcacacctattaaggcgacgtggcatcctcgctatgagctcatagtggtaggt
cgctacccagaccccaagttccccgggtacacgctgaacgagctgcgcaccgtggatgtg
ttcgatggaaacaccggcgacatggtttgtcagctctacgatccaaacgcttcggggatc
atctcgctcaataaatttaaccctatgggagacacactggcttctggcatgggctttaat
attctgatctggaaccaggaggagatggcagccaagaagcatgaacttctcttgaaagcc
atgacaaatgaggagattgaaccatga
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