Zonotrichia leucophrys gambelii (white-crowned sparrow): 135448662
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Entry
135448662 CDS
T09958
Symbol
GTF2H1
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03022
Basal transcription factors
zle03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
135448662 (GTF2H1)
09124 Replication and repair
03420 Nucleotide excision repair
135448662 (GTF2H1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zle03021
]
135448662 (GTF2H1)
03400 DNA repair and recombination proteins [BR:
zle03400
]
135448662 (GTF2H1)
Transcription machinery [BR:
zle03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
135448662 (GTF2H1)
DNA repair and recombination proteins [BR:
zle03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
135448662 (GTF2H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
GeBP-like_C
Motif
Other DBs
NCBI-GeneID:
135448662
NCBI-ProteinID:
XP_064570942
LinkDB
All DBs
Position
5:complement(43237556..43261553)
Genome browser
AA seq
548 aa
AA seq
DB search
MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTVSHMYADIKCQKISPEGK
AKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQE
DPVLFQLYKDLVVSQVISAEEFWANRLSLNAGDNSAAPNKQDVGISAAFLADVRPQTDGC
NGLRYNLTSDIIESIFRTYPAVKMKYAENVPHNMTEREFWTRFFQSHYFHRDRLNTGSKD
LFAECAKLDEKGLKAMVSQGVKNPLIDLTALEDKTLDEGYGVASVASTSNASKSARESSN
AAIIKRFNHHSAMVLAAGLRKQEAQNDHYSETSSTDGNSRDSDFFQPPLKKVKLQEAIEY
EDLSKNNSVKTIALNLKKSDRYYHGPTPIQSQQYATSQDIINSFQSIRQEMEAYVPKLTQ
VLSSGDAASTIAVLSPGGALMQGGTQQAINQMVPNDIQSELKHLYVAVGELLRHFWSCFP
VNTPFLEEKVVKMRSNLERFQVTKLCPFQEKIRRQYLSTNLVSHVEEMLQTAYNKFHTWQ
SRRMLKKT
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggcaacatcgtcggaagaagtgctgctgatagtgaagaaggtgcgtcagaagaagcag
gatggggccctgtacctgatggccgaacgcattgcctgggctcccgagggcaaggaccgc
ttcaccgtcagccacatgtatgcagacatcaaatgccagaaaatcagtccagaaggtaaa
gctaaaattcagctgcagctggtattgcatgcaggggacacaaccaacttccacttctcc
aatgaaagcacagcagtgaaggagcgagatgcggtcaaggatcttctacaacagctcttg
cccaagttcaaaaggaaagctaataaagaacttgaggagaagaacagaatgctgcaagaa
gatcctgttttgtttcagctctataaagaccttgttgtgagccaagtaatcagtgctgaa
gaattctgggccaaccgtttaagcctgaatgcaggggataattctgcagcacctaataaa
caagatgtgggcatctctgcagcattcctggctgatgtacggcctcagacagacggctgc
aacgggctgaggtacaacctgacttcggatattatcgaatccatatttcggacataccct
gcagtaaaaatgaaatatgcagagaatgttccacataacatgactgagagggaattctgg
acacgattttttcagtctcattattttcatcgggacaggctcaatacaggctcaaaagac
ctctttgcagaatgtgccaaactggatgagaaagggttaaaagcaatggtgtctcaagga
gtgaaaaaccctctgatagatttaacagctttggaagataaaacattagatgaaggctat
ggtgttgcttctgtggcctctacatcaaatgcctcaaagtctgctagagaaagcagcaat
gctgccatcataaaacgctttaatcatcatagtgccatggtccttgcagctggcctcagg
aaacaagaagcacaaaatgaccattacagtgagaccagcagtacggatggaaactccagg
gattcagatttctttcagccaccactgaaaaaggtaaaactgcaggaggccattgaatac
gaagatttatcaaagaataatagcgttaaaactattgcactaaacttaaagaagtctgat
aggtattaccatggtccaactccaattcaatcacagcaatatgcaactagtcaggatata
attaattcatttcagagtattagacaagaaatggaagcatatgtacccaaactaactcag
gttctttccagtggtgatgctgccagcactattgcagtcctgtcacctggaggagcactt
atgcagggtggaacacagcaagccataaaccagatggtgccaaatgacattcagtctgaa
ctaaaacacttgtatgtggcagtaggggaattgctacgacacttctggtcctgcttccct
gttaacacgccattcctagaagaaaaggttgtgaaaatgaggagcaacttggaaagattt
caggttacaaagctctgcccattccaagaaaagattcggagacaatatttaagcacaaat
ctggtaagtcatgtagaagagatgctgcagacagcctacaataagttccacacgtggcag
tcgcggcgcatgctgaagaagacgtga
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