Zonotrichia leucophrys gambelii (white-crowned sparrow): 135448937
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Entry
135448937 CDS
T09958
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zle03009
]
135448937 (IGHMBP2)
03012 Translation factors [BR:
zle03012
]
135448937 (IGHMBP2)
Enzymes [BR:
zle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
135448937 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
135448937 (IGHMBP2)
Ribosome biogenesis [BR:
zle03009
]
Eukaryotic type
Other ribosome biogenesis factors
135448937 (IGHMBP2)
Translation factors [BR:
zle03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
135448937 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
Helicase_RecD
ResIII
nSTAND3
DEAD
AAA_16
AAA_22
UvrD-helicase
Flavi_DEAD
SLFN-g3_helicase
IstB_IS21
AAA_25
ABC_tran
T2SSE
AAA
DAP3
PhoH
UvrD_C_2
NTPase_1
Herpes_ori_bp
Motif
Other DBs
NCBI-GeneID:
135448937
NCBI-ProteinID:
XP_064571385
LinkDB
All DBs
Position
5:complement(48361252..48385282)
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AA seq
999 aa
AA seq
DB search
MAAEAAELHLGLLQDEREAEVAQSRAWQESVSLKELQRRGVCLLKLQLSSQRTGLYGRLL
VTFQPRKRDSDTELPSNSFGPGDIVGLYESAGQGDPLCTGVVTRVTPKAVTVALEEARDG
ELALDHERSFRLLKLANDVTYNRLKRALTALKQYRGGPASDLIDVLFFASAPRAFPETKP
LEFFNGSLDESQKEAVSFSLAQRELAIIHGPPGTGKTTTLVEIILQAVQQGLKVLCCAPS
NVAVDNLVERLAGRGPRLLRLGHPARLLQPIQQHCLDAVLARGDGARIVADIRSDIDHAW
AKTKKAQDKGERSHFLGEIKTLRKELKEREEAAMAAALSQASIVLATNTGASSDGPLKLL
PETHFDLVVIDECAQALEASCWIPLLKAPKCILAGDHKQLPPTIISHRAAAEGLSLSLME
RLAGHYGERAVRMLMVQYRMHRLIMEWASSELYGGRLSAHPSVAQHLLRDLPGVSDTEET
STPLLLIDTAGCGLFELEVEDEQSKGNPGEVQLVGMHVQALVDAGVKAKDIAVVAPYNLQ
VDMLRQHLCHSHPELEIKSVDGFQGREKEAVILSFVRSNKKGEVGFLAEERRINVAVTRA
RRQVAVVCDSRTVGGRPFLRRLLDHLAQHGLVRSAFEYLDDLVPQNYPGEGQAQRQQGPK
APGPKAPGPKARPAPAGKLKAAAAGAGSQKPGARSSPSNATAGRDSSGSKEGGDRFRAML
VAFLASSEAQLDFPASLNSHERMLVHVLAEEYGLQHLSSGEGRDRYISVRKAVPKQPTLP
SEPLPESPLSSEPQLPPEPLPKAPLPSEPLPEPQHPHGNTPDPVEPKESSKSSGKVDLKS
LHLERVQREKARREEAARKVQEPKSGKRKKDKSEAKAKPAIGNVAGEDFDALISAAMEAD
RTCAFPRCKASVTTLGQLCHHCQRLFCLSHHIPEGHGCGDRAKAQARQRISREGILYPGS
GPKDKSLDPARRAHLQRRLDQKLGELTSQRKGKKKDKEK
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgaggcggcggagctgcacctggggctgctgcaggacgagcgggaggctgag
gtggcccagagcagggcatggcaggagagcgtctccctgaaggaattgcagcggagagga
gtctgcttgctcaagctgcagctcagcagccagagaaccggcctctacgggcgtctcctc
gtgacattccagcccaggaagcgggactcggacaccgagctgccctccaacagctttggg
cctggggacatcgtggggctctatgagtcggctgggcagggggacccactgtgcacgggc
gtggtgacacgtgtcacccccaaggcagtgacggtggccctggaggaggcccgggatggg
gagctggccctggaccacgagcgctccttccgcctgctcaagctggccaacgatgtcacc
tacaacaggctcaaaagagctctgactgcactcaagcagtaccggggtggcccagcttcc
gacctgatcgacgtcctcttctttgcctctgctcccagggcattccctgaaacaaagcct
ctggagttcttcaatggctccctggatgagtctcagaaggaagctgtgtccttctccctg
gctcagagggagctggccatcatccacgggcctccgggcacagggaaaaccacgaccctg
gtggagatcatcctgcaggctgtgcagcagggcctgaaggtgctgtgctgtgccccgtcc
aacgtggccgtggataacctggtggagcggctggcgggccgcgggccgcggctgctgcgc
ctcgggcaccccgcccgcctgctgcagcccatccagcagcactgcctggacgccgtgctg
gcccgaggggacggcgcccgcatcgtggccgacatccggagcgacatcgaccacgcctgg
gcaaaaaccaaaaaggcccaagacaagggagagagaagccattttctgggtgagatcaag
accctgaggaaggagctgaaggagagagaagaggctgccatggctgcagccctcagccag
gccagcattgtccttgccaccaacacaggtgcttcctcagacggccccctgaagctgctg
cccgaaacccactttgacctggtggtgattgatgagtgtgcccaggctctggaagccagc
tgctggatccctctgctgaaagctcccaagtgcatcctggctggggatcacaagcagctg
ccccccaccatcatctcccacagggcggcggccgaggggctgtccctgagcctgatggag
cggctggcggggcactacggggagcgggcggtgcggatgctgatggtgcagtaccgcatg
caccgcctcatcatggagtgggcgtcctcggagctctacggcggccgcctcagcgcgcac
ccctccgtggcacagcacctgctcagggacctaccaggtgtttctgacacagaagagacc
agcactcccctgttgctcatagacaccgctggctgtggcctgtttgagctggaagtggag
gatgagcagtccaaggggaatccaggggaggtccagctggtggggatgcacgtgcaggcc
ttggtggacgctggtgtgaaggccaaggacatcgctgtggtggccccctacaacctccag
gtggacatgctcagacagcacctttgccacagccaccccgagctggaaattaaatcagtg
gatgggttccagggcagggagaaggaggcagtgatcctgtcctttgtcagatccaacaag
aaaggtgaggtgggcttcctggccgaggagcggcgcatcaacgtggcggtgacgcgggcg
cggcgccaggtggccgtggtgtgtgacagccgcaccgtgggcggccgccccttcctgcgg
cgcctgctggaccacctggcccagcacggcctcgtgcgctccgccttcgagtacctggat
gacctcgtgccccaaaactaccccggggagggccaggcccagcgccagcagggccccaaa
gcaccgggccccaaagcgccgggccccaaagcgcggccggctccggctgggaagctcaag
gcggcggcggccggagcggggagccagaaaccgggagcacggagctccccgagcaatgcc
acagctgggagggacagctcagggtcaaaggagggtggggacaggttcagggccatgctg
gtggccttcctggcgagcagcgaggcacagctggatttcccggcatccctgaattcccac
gagcggatgctggtccatgtgctggcagaggagtacgggctgcagcacctgagctctggg
gagggccgggacaggtacatcagtgtccgcaaggcagtccccaagcagcccacgctgccc
tctgagccccttcctgagtccccactgtcctctgagccccagctgccccctgagcccctt
cccaaggccccactgccctccgagccccttcccgagccccagcatccccacgggaacacc
cctgaccctgtggagccaaaggagagcagcaagagctcagggaaagtggatctgaaatcc
ctgcacctggagagagtccagagggagaaagccaggcgggaggaggcggccaggaaggtg
caggagcccaagagtggcaaaaggaaaaaggacaaaagtgaagccaaagcaaagccagcg
atcgggaacgtggccggagaggattttgatgctctgatctcggctgccatggaagctgac
aggacctgtgccttcccccgctgcaaggcctctgtcaccaccctgggccagctctgccac
cactgccagcggctcttctgcctcagccaccacatccccgaggggcacggctgtggggac
agggccaaggcgcaggcccggcagcgcatcagccgcgaggggatcctgtaccccggcagc
ggccccaaggacaaatccctggatcccgccaggcgagcccacctccagcgccgcctggac
cagaagctcggcgagctgacgagccagaggaagggcaaaaagaaagacaaggagaaatga
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