Zonotrichia leucophrys gambelii (white-crowned sparrow): 135448976
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Entry
135448976 CDS
T09958
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135448976 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zle03019
]
135448976 (PATL1)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135448976 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
135448976 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
135448976
NCBI-ProteinID:
XP_064571460
LinkDB
All DBs
Position
5:48777029..48784435
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AA seq
764 aa
AA seq
DB search
MFRYPSLEDCPLDEDEDAFQALGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELEDKA
GSSRERDGPVGNDGDVLGDPEDALAERLTRLVIDSELEDPAIMQAVHTRDPPQQPGGLNS
SIWDSSAVLRRIRGPLLTQEMPSVSVLDYALPQRPPQARDEERDPSERALPRRSSSPIIG
SPPVRAIPIGTPPKQAAIPNFNQQILCPKPVHIRATMQQRYPAPYGERMSPNQLCNVPNS
SLLGHPFPHSVSPVLTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLPSVNPKLLQGRV
GQMMSPAGGFRAFFGAPPAPPPSQLPHPPGPGSHLQNLRPQPQMFRPDTTHLHPQHRRLL
HQRQQQNRNQHRSLNGSGGDRGGHRSSHQEQIRKDPYANLMLQREKDWVSKIQMMQLQST
DPYLDDYYYQNYFQKLEKLAAAEEVHGDGPKKERTKLITPQVAKLEHTYKPVQFEGSLGK
LTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYERRYL
LSLEGERPALMEERKQKICDMYDNLRGKAPGQDRPSDDHFMQIMCIRKGKRLVARILPFL
APEQAADVLMATARNLPFLIKKDAQDEVLPCLLRPFSHVLYHLPLGTVTSLVQQLTNLPQ
SAAAPTNLHLTAVLQNKFGLSLLYLVLSRGEELQSSDTNTELMQDNQWTEVMLMATRELL
RIPQGALAKPVSIPSNLISLFSRYVDQQKLNLLETKLHLVQGIR
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgttccggtacccgtccctggaggactgcccgctggacgaggatgaagatgccttccag
gccctgggggaggaggatgaagacatcgaccagttcaacgatgacacctttggggccggc
gccgtcgatgatgactggcaggaggcccacgagcggctggcggagctggaggacaaggcc
ggctcgagccgggagcgggacggtcccgttggcaacgacggggacgtcctgggcgacccc
gaggacgcgctggccgagcggctgacgcgcctcgtcatcgacagcgagctggaggacccg
gccatcatgcaggccgtgcacaccagggatcccccgcagcagcctggagggctcaattcc
agcatctgggacagctcggccgtgctgcggcgcatccgggggccgctcctcactcaggag
atgccctcggtgtccgtgctggattatgccctgccccagcggcctccgcaggctcgggat
gaggagcgggatccctcggagcgggcgctgccccggcgctcctcctcccccatcatcggg
agcccccctgtccgggccattcccatcgggaccccccccaaacaggctgccatccccaac
ttcaaccagcagatcctgtgtcccaagcctgtccacatccgagctaccatgcagcagcgt
tatcccgctccctatggagagaggatgtcccccaaccagctctgcaatgttccgaattcc
tccctcctgggccacccgttcccccacagcgtctctcccgtcctcacacacctgcagaga
gcccagctgctcggaggagcccaggccggccgaatgtcccccagccagtttgcccgcgtg
tccgggctggtggggagcccgctgccctcggtgaaccccaagctgctgcagggcagagtt
gggcagatgatgtccccggccggagggttccgtgcctttttcggggctccccccgccccg
ccgccctcgcagctgccgcaccctccgggccccggatcccacctgcagaacctgaggcct
cagccccagatgttccggccggacacgacccacctgcacccgcagcaccggcggctcctg
caccagcggcagcagcagaaccgcaaccagcaccggagcctcaacggctccgggggggac
cgagggggccaccggagcagccatcaggagcagatccgtaaggatccctacgccaacctc
atgctgcagcgggagaaggactgggtgtccaagatccagatgatgcagctgcagagcact
gatccctacctggatgattattattatcagaattacttccagaagctggagaagttggca
gcagccgaggaagtgcacggtgacggccccaagaaggagcgcactaaactcatcacccct
caggtggccaagctggagcacacctacaagccagtgcagtttgagggctcgctgggaaag
ctcaccgtctccagtgtcaacaaccctcggaagatgatcgacgccgtggtgacgtcccgc
agcgaggatgatgagacgaaggagaagcaggttcgggataagaggcgacagacgctcgtc
accattgagaaaacgtacagcctcctcctggacgtggaggactacgagcgccgctacctc
ctgagcctggaaggggagcggccagccctgatggaggagaggaagcagaagatctgtgac
atgtatgacaatctgagggggaaggcaccagggcaggacaggccgagtgatgaccacttc
atgcagatcatgtgcatccggaaaggaaagcgcctggtggcccggatcctgcccttcctg
gctccagagcaagcagccgacgtgctcatggccacggccaggaacctgcccttcctcatc
aagaaggatgctcaggatgaggtgcttccctgcctcttgaggcccttttcccatgtcctc
taccaccttcccttgggaacagtcaccagccttgtgcagcagctcaccaacctacctcag
agcgccgccgctcccaccaacctgcacctcactgctgtgctccaaaacaagtttggtctg
tccctgctgtacctggtcctgagccgaggggaggaattgcagagctcagacacaaacaca
gagctgatgcaggacaaccaatggacggaggtgatgctgatggcaacccgggagctgctg
cggatccctcagggagccttggcaaagcccgtgtccatcccctccaacctgatctccctc
ttctcccgctacgttgaccagcagaagctgaacctgctggagacgaaattgcacttagtg
caggggatccggtag
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