Zonotrichia leucophrys gambelii (white-crowned sparrow): 135449234
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Entry
135449234 CDS
T09958
Symbol
LRFN5
Name
(RefSeq) leucine-rich repeat and fibronectin type-III domain-containing protein 5 isoform X1
KO
K16358
leucine-rich repeat and fibronectin type-III domain-containing protein 5
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
135449234 (LRFN5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
zle04515
]
135449234 (LRFN5)
04990 Domain-containing proteins not elsewhere classified [BR:
zle04990
]
135449234 (LRFN5)
Cell adhesion molecules [BR:
zle04515
]
Immunoglobulin superfamily
SALM family
135449234 (LRFN5)
Domain-containing proteins not elsewhere classified [BR:
zle04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
135449234 (LRFN5)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
I-set
Ig_3
LRR_5
LRR_1
ig
LRR_9
Ig_2
fn3
C2-set_2
FN3_DSCAM-DSCAML_C
Ig_PDGFR_d4
LSR
C2-set_3
Motif
Other DBs
NCBI-GeneID:
135449234
NCBI-ProteinID:
XP_064572060
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All DBs
Position
5:60726570..60766430
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AA seq
765 aa
AA seq
DB search
MEKLLLFLLFIGVAVRAQICPKRCVCQILSPNLATLCAKKGLLFVPPNIDRRTVELRLAD
NFVTNIKRKDFANMTSLVDLTLSRNTISFITPHAFADLRNLRALHLNSNRLTKITNDMFS
GLSNLHHLILNNNQLTLISSTAFDDVLALEELDLSYNNLETIPWDAVEKMVSLHTLSLDH
NMIDHIPKGTFSHLHKMTRLDVTSNKLQKLPPDPLFQRAQVLATSGIISPSTFALSFGGN
PLHCNCELLWLRRLSREDDLETCASPTLLSGRYFWSIPEEEFLCEPPLITRHTHELRVLE
GQRAALRCKARGDPEPAIHWISPEGKLISNATRSTVYDNGTLDILITTVKDTGSFTCIAS
NPAGEATQTVDLHIIKLPHLLNSTNHIHEPDPGSSDISTSTKSGSNASSSNGDTKVSQDK
KVVVAEATSSTALLKFNFQRNIPGIRMFQIQYNGTYDDSLVYRMIPPTSKTFLVNNLAAG
TMYDLCVLAIYDDGITSLTATRVVGCTQFTTEQDYVRCHFMQSQFLGGTMIIIIGGIIVA
SVLVFIIILMIRYKVCNNNGQQKATKVSNVYSQTNGAQIQGCGGALSQSMSKQALGHEEG
VQCCKAAADGAAQSPDAGSGQDSATTTSALPPAWTSSSPLAQKQKRKSAPKAGSEAQGEA
GGGAEPQNSNRNNSTALALAGRGPEAAPTYKRAQSKPSKFLTLPAEASRAKRRRSLGGEL
LEPRGPAGLRSKRSMSMNGMLLQADCAQGGTAPFSSSEWILESTV
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaactgcttttgtttctgctgttcattggcgtagcggtgcgagctcagatctgc
cccaagcgctgcgtctgtcagatcttgtctcccaacctcgccaccctgtgtgccaagaaa
gggctcttgtttgttcctcccaacattgacaggaggaccgtggagctgcggctggcagac
aactttgttacaaacattaaaaggaaagactttgccaacatgaccagcctggtggacctg
acgctgtcccggaatacaatcagttttatcacacctcacgcgtttgccgacctgcgcaat
ttgcgggctctgcatttgaacagcaaccgattgactaagatcactaatgacatgttcagt
gggctctccaatctccaccacttgatactgaacaacaaccagctgactttaatttcttcc
acagcttttgacgatgttttagctctcgaggaattggatttgtcttacaacaatctggaa
accatcccttgggatgccgtggagaaaatggtcagtttgcacactctcagtcttgaccac
aacatgattgaccatattcctaaggggaccttctcccacctgcacaagatgaccaggctg
gacgtcacgtccaacaaactgcagaagctgccgcctgacccgctcttccagcgcgctcag
gtgctggcaacctcaggaattatcagcccctcgacgttcgcgctgagctttggtgggaac
cccttgcattgcaactgtgagctcttgtggctgaggcgcctttccagggaggacgacctg
gagacctgtgcctctcccacgctgctgtcgggccggtacttctggtccatccccgaggag
gagttcctgtgcgagccgccgctcatcacgcggcacacgcacgagctgcgcgtgctggag
gggcagcgcgctgccctgcgctgcaaggcccgcggcgaccccgagccggccatccactgg
atctcgcccgagggcaagctgatctccaacgccaccaggtccacggtgtacgacaacggc
acgctcgacatcctcatcaccacggtgaaggacacgggctccttcacctgcatcgcctcc
aaccccgcgggggaggccacgcagaccgtggacctgcacatcatcaaactgccccacctg
ctcaacagcacaaaccacatccacgagcctgacccgggctcctcggatatctccacatcc
accaagtcgggctccaacgccagcagtagcaacggggatactaaagtcagccaggataag
aaggtggttgtcgcagaagcgacgtcctccacagctctgctgaaattcaatttccagagg
aatatacctgggatccgtatgttccaaatccagtacaatggtacttacgatgactccctt
gtttacagaatgatacctcccacgagcaaaacctttctggtcaacaacctggccgcgggg
acgatgtacgacctgtgtgtgctggccatctatgacgacgggatcacctcgctgacggcc
accagggtggtgggctgcacgcagttcaccaccgagcaggattacgtgcgctgccacttc
atgcagtcccagttcctgggcgggaccatgatcatcatcatcggtgggatcattgtggcg
tccgtgctcgtgttcatcatcatcctcatgatccgctacaaggtgtgtaacaacaatggg
cagcagaaggccaccaaggtcagcaacgtgtactcgcagaccaacggggctcagatccag
ggctgcggcggggcgctgtcgcagtccatgtccaagcaggctctcgggcacgaggagggc
gtccagtgctgcaaggccgcggccgacggcgccgcgcagtcgccggacgccggctccggc
caggactcggccaccactacctcggctttgcctcccgcctggacttccagctctcccctg
gcgcagaagcagaagcgcaagtcggcgcccaaggccggcagcgaggcgcagggcgaggcg
ggcggcggcgccgagccccagaactccaacaggaacaactccacggccctggcgctggcc
gggcgcggccccgaggcggcccccacgtacaaaagagcacaatccaagccaagtaagttc
ctgacgctgccggccgaggccagccgcgccaagcggcggcgctcgctgggcggagagctg
ctggagccccgcggccccgccggcctgcgctccaagcgcagcatgtccatgaacgggatg
ctgctccaggcagactgcgcccagggcggaacggcacctttctccagttctgagtggata
ttggaaagcactgtgtga
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