Zonotrichia leucophrys gambelii (white-crowned sparrow): 135449439
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Entry
135449439 CDS
T09958
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zle03009
]
135449439 (PDCD11)
Ribosome biogenesis [BR:
zle03009
]
Eukaryotic type
90S particles
Other 90S particles
135449439 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
HAT_Syf1_CNRKL1_N
OB_RRP5
HAT_PRP39_N
Spt6_S1
OB_RRP5_4th
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
TPR_14
TPR_19
UTP6_C
TPR_15
ARM_TT21_5th
ARM_TT21
TPR_CcmH_CycH
TPR_12
PVL_ORF50
Motif
Other DBs
NCBI-GeneID:
135449439
NCBI-ProteinID:
XP_064572523
LinkDB
All DBs
Position
6:complement(12329287..12355922)
Genome browser
AA seq
1836 aa
AA seq
DB search
MASMEENFPRGGIQKKPAEGKTPKPKSERDNLFDVQHEEKSQKRKRSQKDPEKPKRFKAD
KTVKGAVKDDVMNIGPLTIEALSEGMLLLGCIKEVSDYELTVSLPNGLSGFVPVTQISDA
YSSLLSKQVAQGEVLEELNSLPDLFSPGTLVRCIVTSIEKSDDGRRSVKLSIDPKKVNKG
LNSTALAAGMLLSGSVLSVEDHGYLIDIGVTGTHAFLPHQKAKNYIKAAKKGPDLKIGQN
LNCLVVEVKNEGRVVCLSIDRSEVAASIATERQNWALSNLLPGLVVKARVQKVAPLGLKL
TFLSYFTGIVDFMHMDPEKSMSYSPDQVVKACVLSVHPTSRAVRLTLRPPFLHAGGAPRQ
LPGQLMGAVLEEATLKAFYKQFGAVFELDDGILAFARLKHLSKTRKSFKPEAFKEGCKHK
CRIIDYSLMDEMCIVSLKNQIIEAQFLQYQDIHTGDVVQGKVLSLKPIGMQVKVADGIRG
LVPSLHLSDVILKQPEKKFSIGDEVKCRVLECNPGGKKLILTLKKSLVQSKLPVLSNYED
AKPGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELGSEPISCPDKVFYEGQVLKVMVLK
CEPQQERLLLSFRLSSKPGPGDKWKCTPKEKQEMKYQLGEMVDVKILKKKDNGLEVSILE
DEDNVVAWIPKLHLSDFVATAKLLWHCLQEGDVLPRVMYLSDKGEHIILSRKSAVISAVQ
EEQVVRSFSEIQPGMLLTGYVRNVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVV
GQTVIAKVMSIDEEKQRVLLNLKVSECSSGDSAAESFGLLNQYFKELKEIRDLLKRGEPS
ICELVPGKRVHLVVQDVREDGSALFSGSSVTGLTVTATRYHLGDKNIAPGEKRKALILHV
DALTSEVFVSLREELLKQRPKRRLRESSQHSAVVQHITEHFAIASLPETGQLAAVPIACH
LNDTFRFDSEKLRVGQTISATLKSVKENKHGVLLAVQGPAKKNVFVRVRNESETALEEML
PAVKHSLSPGDVVTGTVKSVKPTHVTVAIDDKLTGSIHASRILDEVPIGSFPTSTLKAGQ
KVTARVIGGRDVNTHRCLPITHPHFTQSIPELSIRPSEQEGEFTAMLNLKEEGSLKKLGL
YEAGQTVTCFVKKYNMLKNWLEVEVAPDIRGRVPHLLLSLNTKVLKHPEKSFKSGQAISA
TVTGTDASETCLCLSLTGIQSLEQDTISVGMVTKVTPHVGLTIALPGGKAGRVSLFHLND
TYTEDPLGNFKVGKIVRCYILSNENGKIQLSLRQSRLNPKINSKVEDIEITSIKDVKKGQ
LVRGYVKSITPSGVFFGLSSSLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAKVLGVN
RKEKHIELSLLPEDTGMPSVLPESLGLPQYGAEEEKRETDDEKKEEEPKLKKKRRRGNDE
SGQLQEAKPKKKKICPADENDSGIEVYYREEEEDDQEEEAAKKKSTVRKPGEAPRLQVSV
GFTWGEDNAMDIPVLDQKEESSESEEEEDVQSKLKKRTKKEKELEKQKKEKELCKVEAAL
MDPSRQPQSADDFDRLVLGSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQ
EKLNVWVALLNLENMYGTEETLMKVFERAVQYNEPLKVFQHLCDIYASSEKYKQAEELYH
TMLKRFRQEKSVWLKFASFLLKQGQAEATHRLLERALKALPTKEHVDVISRFAQLEFHSG
DTEHAKALFESTLSSYPKRTDIWSIYMDIMIKHGSQKEIRDIFERVIHLSLAPKKMKFFF
KRYLDYEKKFGTEERVLAVKRAALEYVETKSSLADT
NT seq
5511 nt
NT seq
+upstream
nt +downstream
nt
atggcatccatggaagaaaactttcctcgagggggcatccagaagaaacctgcggaagga
aaaacacccaagccaaagtcagagcgggacaatttgtttgatgttcaacatgaagaaaaa
tcccagaaaagaaaaaggagccagaaggatccagaaaagccaaaaaggttcaaggcagac
aaaactgttaaaggtgctgttaaagacgatgttatgaatattggaccactcacaattgag
gcactcagtgagggcatgctgctccttggctgtatcaaagaggtcagtgactacgagctc
accgtcagtttgcccaacggcctctccgggtttgtgccggtcacgcagatcagcgatgcc
tacagcagcctgctcagcaagcaggtggcccagggagaagtcctggaggagctgaattct
ctcccagacctgttttctccagggacactggtcaggtgcattgtgaccagcattgagaaa
agtgacgatggacgccgcagtgtcaagttatcgattgaccccaagaaggtcaacaagggc
ctgaactctacagcactagcagcaggcatgctgctctctggttctgtgttgagtgtggaa
gaccatggctacctcatagatattggtgtcactggaactcatgctttcctgcctcatcag
aaagccaaaaattacatcaaagcagccaagaaagggcctgacttgaaaataggccagaac
ctgaactgcctggttgtggaagtgaagaatgagggcagggtggtctgtttgtccattgac
cgatcggaggtggctgcatccattgccacagagcgacagaactgggcactctctaattta
ttgccagggctggtggtgaaagctcgagtgcagaaggtggccccacttgggttgaaactg
acttttctgtcttacttcactggcattgtggatttcatgcacatggacccagagaaatcc
atgagctattctccagatcaagtggtgaaggcctgtgtgctgtccgtacaccccacgtcg
cgcgcggtgcggctcacgctgcgcccgcccttcctgcacgccgggggagccccacggcag
ctccccgggcagctcatgggggctgtgctggaggaggccaccctgaaagccttctacaaa
cagtttggggccgtctttgagcttgatgatggcattctagcatttgcacggttgaagcat
ctttcaaaaaccagaaaatcctttaaacctgaagcatttaaggaaggttgcaaacataaa
tgtcgtatcattgactacagcctgatggatgagatgtgtattgtatctctgaagaaccag
attattgaagcacagtttctgcagtaccaggatatccacacaggtgatgtggtgcagggc
aaagtgctctctctaaagcccattgggatgcaggtgaaagtggctgatgggattagagga
cttgtgccatccctccatctctctgatgtgatcctgaagcagcctgagaagaagttcagc
ataggagatgaagtcaagtgtcgggtactagagtgcaatcctggaggaaagaagctgatc
cttactctaaagaaaagtctcgtccagtcaaagcttccagtcctctcaaattacgaagat
gcaaagccaggcctgatcacacatggctttgtagtgtgtgcaagggagtttggctgcatt
gtgaagttctacaatgatgtcaaaggtctggtacccaagaatgagctgggctcggaaccc
atatcttgtccagataaagtcttctatgaaggccaggttcttaaagtaatggtcttaaaa
tgtgagcctcagcaggaaagactcttgttgtccttcagattatcaagcaagcctggccct
ggggacaaatggaaatgtactccaaaggagaaacaggaaatgaagtaccaactaggagag
atggttgatgtgaaaatcttgaagaagaaagataatggtttagaagtttccatcttagaa
gatgaagacaatgtggtagcctggatccccaagctgcacctctctgactttgttgctacc
gccaagctcctgtggcactgtcttcaagagggagatgtcctgcccagagttatgtatcta
agtgacaagggagagcacattatcttgagtagaaagtctgcagttatttctgctgtacag
gaggagcaagttgtaagaagcttctctgaaatccagcctgggatgctgttgactggttat
gtgaggaatgtgatgccctttggagtgtttgtggagttcccttttggtgtgacaggactg
gcacctaaagtgagcatgagtgacaagtttgtgacagacaccaaggaccactttgtggtg
ggacagactgtgattgccaaggtgatgagcattgatgaggagaagcagcgtgtgctcctc
aatctgaaggtgtctgagtgcagctcaggagattctgctgcagagagctttggcctcctg
aatcagtatttcaaggagctgaaagaaatcagggacttgctgaaaagaggagagcccagc
atttgtgagttggtgcctgggaagagggtgcatctggttgtgcaggatgtgagggaggat
ggctcagcactgttcagtggcagctctgtcacaggcctgactgtaactgccacccgctac
catttgggagacaaaaatattgctcctggtgagaaaaggaaggcattgatccttcatgtg
gatgccctcacatctgaagtgtttgtttctcttcgggaagaactgttaaagcaaaggccc
aagcgacggctccgagagagctcgcagcactctgcggtggtgcagcacatcacagagcac
tttgccatcgcgtctctgccggaaacaggccagctggcagctgtgcccatcgcctgccac
ctcaacgacaccttccgcttcgactcggagaaactcagggtgggacagacaatctctgcc
accttaaaatccgtgaaggagaacaagcacggggtcttgttagcagtacagggcccggcc
aagaagaatgtttttgtgagggtgcggaacgagtcagagacagcgctggaggagatgctg
cctgctgtgaaacactcgctgtccccgggggatgttgtcaccggtaccgtcaaatctgtc
aaacccacccacgtcactgttgccattgatgacaagctgacaggttcaatccatgcgtcc
cggatcctggatgaagtgcccataggctcttttcctacttccactctgaaagctggacag
aaagtgactgctcgagttattggaggcagagatgtgaatactcacaggtgcctgccaatc
acccatccacacttcacacagtccattccagagctcagcattcgaccaagtgaacaagaa
ggggaattcacagcaatgctgaaccttaaagaagaaggttccctcaagaaacttggactc
tacgaggctggacagacagtcacctgttttgtaaagaagtataacatgctcaaaaactgg
ctggaggtggaagttgcccctgacattcgaggaagagttcctcacctgctgctgtctctg
aacaccaaggtcttaaaacatccagaaaagagctttaaaagtggccaggcaatatcagct
acagtgactggaacagatgccagtgaaacatgcctctgcttgtcactcacaggaattcag
tcactggagcaggataccatctctgtaggcatggtaacaaaggtgactccacatgttggc
ttgaccattgcactgccaggtgggaaagctggcagagtcagcctctttcacctgaatgat
acttacacagaggatcctctggggaacttcaaagttggcaagattgtcaggtgctacatc
ctctccaatgagaacggtaaaatccagttgtctctccggcagtcccggctaaatccaaag
ataaacagcaaagtggaggatattgaaataacaagtattaaggatgttaaaaaaggccag
ctagtgagaggctatgtcaaatcaatcactccatcaggtgtattctttggattgtccagt
tctctcctgggccgaattctgttccagaatgtttctccatactttgtgcagaaacattcc
ttatatgaaaagtacctgcctgaaggaaaactcctcactgccaaagtacttggggtaaat
agaaaagaaaaacatattgagctctctctcctgcctgaggacactgggatgccaagtgtc
ttgcctgaatccctaggcctaccacaatatggagcagaggaagagaaaagagagacagat
gatgagaaaaaagaagaagagcctaagctgaagaaaaaaaggagaagaggaaatgatgaa
agtggtcagttgcaggaggcaaagccaaagaagaagaagatctgcccagcagatgaaaat
gacagtggaattgaggtgtattaccgtgaggaggaagaggatgaccaggaggaagaggca
gctaaaaagaaatctacggtaaggaagcctggtgaagctcccaggctgcaagtctccgtg
ggcttcacgtggggtgaagacaatgcaatggatatacctgtgctggatcagaaggaagag
agctcagagagcgaggaggaggaggatgtgcagtccaagctaaagaaacgaacaaagaag
gagaaggagctggagaagcagaagaaggagaaggagctttgcaaagtggaggcggctctc
atggacccgagccggcagccccagtccgccgatgacttcgaccgcctggtgctgggcagt
cccaacagctccatcctctggctgcagtacatggctttccacctccaggccacagagatt
gagaaggccagagctgtggcagagagagcacttaagactatcagtttcagggaagaacag
gagaagctgaacgtctgggtagctctgctgaacttggagaacatgtatggtactgaggag
acactgatgaaggtctttgagagggcagttcaatacaatgagcctctgaaagtcttccag
catctgtgtgacatctatgccagttctgagaagtacaagcaagcagaagaattgtaccac
accatgctgaagcgttttcgtcaggagaaatccgtgtggctgaaattcgcctctttcctc
ctcaagcaaggccaagctgaggctacacacaggcttctggagcgtgccctcaaggctctg
cccaccaaagaacatgtggatgtcatttcaaggtttgcacagctggaattccattctggg
gacacagaacatgccaaggccctctttgagagcaccctcagcagctatcccaagaggaca
gacatttggtccatctacatggacatcatgatcaagcatggcagccagaaggaaatccga
gacatctttgagagggtcatacacctgagcttggcaccaaagaagatgaaattcttcttc
aaacgctacctggattatgagaagaaatttggtacagaagaacgtgttctggctgttaaa
agagcagcacttgagtatgtggagaccaagagttcccttgctgacacctaa
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