Zonotrichia leucophrys gambelii (white-crowned sparrow): 135449721
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Entry
135449721 CDS
T09958
Symbol
VCL
Name
(RefSeq) vinculin isoform X1
KO
K05700
vinculin
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04510
Focal adhesion
zle04520
Adherens junction
zle04810
Regulation of actin cytoskeleton
zle04820
Cytoskeleton in muscle cells
zle05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135449721 (VCL)
04520 Adherens junction
135449721 (VCL)
09142 Cell motility
04820 Cytoskeleton in muscle cells
135449721 (VCL)
04810 Regulation of actin cytoskeleton
135449721 (VCL)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
135449721 (VCL)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
zle04812
]
135449721 (VCL)
04147 Exosome [BR:
zle04147
]
135449721 (VCL)
Cytoskeleton proteins [BR:
zle04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
135449721 (VCL)
Exosome [BR:
zle04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
135449721 (VCL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vinculin
Talin_IBS2B
Motif
Other DBs
NCBI-GeneID:
135449721
NCBI-ProteinID:
XP_064573058
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All DBs
Position
6:20713720..20764966
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AA seq
1066 aa
AA seq
DB search
MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVSAVQAAVSNLVRVGKE
TVQTTEDQILKRDMPPAFIKVENACTKLVRAAQMLQADPYSVPARDYLIDGSRGILSGTS
DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ
ELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKSQGIEEALKNRNFTVEKMSAE
INEIIRVLQLTSWDEDAWASKDTEAMKRALALIDSKMNQAKGWLRDPNAPPGDAGEQAIR
QILDEAGKAGELCAGKERREILGTCKTLGQMTDQLADLRARGQGATPMAMQKAQQVSQGL
DLLTAKVENAARKLEAMTNSKQAIAKKIDAAQNWLADPNGGSEGEEHIRGIMAEARKVAE
MCEEPKERDDILRSLGEISALTAKLSDLRRHGKGDSPEARALAKQIATSLQNLQSKTNRA
VANTRPVKAAVHLEGKIEQAQRWIDNPTVADRGVGQAAIRGLVAEGRRLANVMMGPYRQE
LLAKCDRVEQLSAQLAELAARGEGESPQARAIAAQLQDSLKDLKARMQEAMTQEVSDVFS
DTTTPIKLLAVAATAPSDAPNRDEVFDERAANFENHAARLGATAEKAAAVGTANKSTVEG
IQATVKSARELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMTGLVDEAIDTK
SLLDASEEAIKKDLDKCKVAMANMQPQMLVAGATSIARRANRILLVAKREVENSEDPKFR
EAVKAASDELSKTISPMVMDAKAVAGNISDPGLQKSFLDSGYKILGAVAKVREAFQPQEP
DFPPPPPDLEHLHLTDELAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGEAINQPMMM
AARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGNKRALIQCAKDIAKASDE
VTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQAT
EMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRKTPWYQ
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtcttccacacgcgcaccatcgagagcatcctggagccggtggcccagcagatc
tcccacctggtcatcatgcacgaggagggggaagtggacggcaaggccatcccggacctc
accgcccccgtgtcggccgtgcaggccgctgtcagcaacctggtgcgggttggaaaagag
actgtgcagacaacagaagaccagatcttgaaaagggatatgccaccagcatttatcaaa
gtggagaacgcctgcaccaagctggtgcgggcagcccagatgctgcaggcagacccctac
tcagtcccagctcgtgattatctcatcgatggctcgagaggaatcctttctggaacatca
gacctgctcctgacattcgatgaagcagaggtccgtaaaatcatccgtgtctgcaaagga
atattggagtatttgactgtggcagaagtggtagagacaatggaggatctggtgacttac
acgaagaatttagggccaggaatgacaaagatggccaaaatgattgacgagcgacaacag
gaattaactcatcaggaacatcgggttatgctggtaaactccatgaatacagtcaaggag
ctattgccagtacttatttcagctatgaagatttttgtaaccacaaaaaattctaaaagc
cagggaatagaagaggccttgaaaaaccgcaatttcacagtagagaaaatgagtgctgag
ataaacgaaataattcgtgtattgcaactcacttcctgggatgaagatgcctgggcaagc
aaggacactgaagccatgaagagagctttagccttaatagattcaaagatgaatcaggca
aaaggttggctgagagatccaaatgcacctccaggggatgctggtgagcaggccataagg
cagatccttgatgaagctggcaaagcaggagagctgtgtgcgggcaaggagcgcagagag
atcctgggcacctgcaaaaccctggggcagatgacggatcagctggctgacctgcgggcc
agaggacagggtgccacccccatggccatgcagaaagcccagcaggtgtcccaggggctg
gacctgctcactgccaaggtggagaacgcagcccgcaagctggaggccatgaccaactcc
aagcaggcaattgctaagaagattgatgctgctcagaattggcttgcagatcccaatggg
ggcagtgaaggggaggagcacattcggggcattatggctgaggcaaggaaagttgcagaa
atgtgtgaggagcctaaagagagagatgacatccttcgttccctgggggagatctctgct
ttgacagccaagctgtcagatctgcgccgacatgggaaaggtgactctcctgaggctcgt
gctttggctaagcaaatagcgacatcacttcagaatttacagtccaaaacaaacagggct
gtagcaaatacaaggccagttaaagcagctgtccatttggagggcaagattgaacaagct
cagaggtggatagacaatcccacagttgctgataggggagtaggccaggctgccatccgc
gggctggttgccgagggccggcgcttggccaacgtcatgatgggcccgtaccggcaggag
ctgctggccaagtgtgaccgcgtggagcagctctctgcccagctggctgagctggctgcc
cgcggcgagggcgagtccccgcaggccagggccattgcagctcagctccaggactcgctc
aaggatcttaaagcacgaatgcaagaagcaatgacccaggaagtttctgatgtttttagt
gacaccacaactcctattaaattgttagctgtagcagccactgctccctctgatgctccc
aacagagatgaggtttttgatgaaagagcagcaaattttgaaaaccatgctgctagactg
ggagctacagcagaaaaagcagctgcagttggaactgccaataaaagtactgtggagggc
attcaggcaacagtgaaatcagcaagggaactcaccccacaggtagtatcagcagctcgt
atcctcttgagaaatcctggaaatcaagctgcttatgaacattttgagaccatgaaaaac
cagtggattgataatgtagagaaaatgacagggttggtggatgaagccatcgatactaaa
tctctgttggatgcatcagaagaggccattaagaaggacctggacaaatgtaaagttgca
atggccaacatgcagcctcagatgctggtagctggtgccaccagcattgccaggcgagca
aaccgcatcctgctggttgcaaagcgggaggtggaaaattctgaagaccccaaatttcgg
gaggctgttaaagcagcctctgatgagctgagcaaaactatatcacccatggtaatggat
gctaaagctgtggcaggcaacatttctgatcctggattgcagaagagtttcttggattct
ggatacaaaattctgggagctgtggccaaagtcagagaagccttccagcctcaggaacca
gattttcctcctcctcctcctgaccttgagcaccttcatctgactgacgagctcgctcct
ccgaaaccaccactgccagagggggaggttcccccacccagaccaccaccacctgaagaa
aaggatgaagagttcccagagcaaaaggcaggagaagcaatcaatcagcccatgatgatg
gctgcaaggcagttgcatgatgaagcccggaaatggtctagcaagggcaacgacatcatc
gcggcggcgaagcgcatggcgctgctcatggccgagatgtcgcgcctggtgcgcggcggc
agcggcaacaagcgcgccctgatccagtgcgccaaggacatcgccaaggcctccgacgag
gtcacccggctcgccaaggaggtggccaagcagtgcacggacaagcgcatcagaaccaac
ctcctgcaggtctgtgagcgaatcccaaccatcagtacgcagctgaaaattctctccact
gtcaaagctaccatgctgggcagaactaatatcagtgatgaagagtcagaacaggcaact
gagatgttggttcataatgcccagaatctcatgcagtctgtgaaggaaactgtgagagaa
gctgaagcagcatccattaagataagaacagatgctggattcactcttcgctgggtcaga
aagaccccatggtatcagtaa
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