Zonotrichia leucophrys gambelii (white-crowned sparrow): 135450126
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Entry
135450126 CDS
T09958
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135450126 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zle03041
]
135450126 (SF3B1)
03036 Chromosome and associated proteins [BR:
zle03036
]
135450126 (SF3B1)
Spliceosome [BR:
zle03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
135450126 (SF3B1)
Complex B
135450126 (SF3B1)
Complex C
U2 SnRNP specific factors
135450126 (SF3B1)
Chromosome and associated proteins [BR:
zle03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
135450126 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
135450126
NCBI-ProteinID:
XP_064574022
LinkDB
All DBs
Position
7:complement(17729173..17752875)
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AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatattgaagcacaaattcgagaaattcaagga
aaaaagcctgctcttgatgaagcacaaggagtaggccttgattccacaggatattatgat
caagaaatttatggtggcagtgacagcagatttgctggatatgtcacatctattgcagct
actgaattggaagatgatgatgatgactacccttccacaagtctgcttggccagaagaag
ccaggataccatgctccagtggcattgcttaatgacataccacaatctactgaacagtat
gatccttttgcagagcaccgtcctcaaaagattgcagatcgggaagatgagtacaaaaag
cacaggcggatgatgataatttcccctgagcgtctcgatccttttgcagatggagggaag
actccagaccctaaaatgaatgccagaacatacatggatgttatgcgtgaacagcattta
acaaaagaagagagggaaattaggcaacaactagctgaaaaagctaaagctggagagctt
aaagtcgtcaatggagccgcttctcagccaccttcaaaacgcaaacggcgttgggatcag
acagctgatcagactcctggtgctacacctaagaaattgtccagttgggatcaagcagag
actccagggcacaccccatccctgcgatgggatgaaaccccaggccgtgcaaagggaagc
gaaactccaggtgccaccccaggctccaagatctgggatcccactcccagccatacccca
gcaggagctgcaacgcccggccgggacacgcctgggcacgcaacgccgggccatgggggt
gccacttccagtgcacgcaaaaatcgctgggatgaaacccccaaaacagaaagagatact
ccgggccatggcagtggctgggctgagacacctcgtacagacagaggcggtgactccatt
ggtgagacaccgaccccaggagcgagcaaaaggaaatcccgctgggatgaaacgcctgcg
agccagatgggcggcagcactcctgttctgacacctggcaaaacacccattgggacccca
gctatgaacatggcaacccctacaccaggtcacatcatgagcatgactcctgaacagctg
caggcttggcgctgggagagggaaattgatgagagaaacagaccactttctgatgaggaa
ttggatgctatgtttcctgaaggatataaggttctgccacccccagcaggttacgtgccc
atccgtacccctgctcggaagctcacagccactcccacgcccctggggggtatgacgggg
ttccacatgcagaccgaggaccgcaccatgaagagtgtcaatgaccagccatcgggcaac
ctgcccttcctgaaaccagatgatatccagtacttcgacaagctgctggttgatgttgat
gaatcgactctgagtcctgaggaacagaaagagagaaaaataatgaaattacttctgaaa
ataaagaatggcacgcctcccatgcgaaaggctgcgctgcggcaaattaccgataaagct
cgggaattcggagcggggccgctgttcaatcagatcctgcccctgctgatgtctccaaca
ctcgaagatcaggagcggcacttgcttgtcaaagtcatcgacagaattctgtacaaattg
gatgacttggtccgaccatacgtacacaagatccttgtcgtcattgaaccactgctgatt
gatgaagactactatgctagagtggaaggcagagaaattatttcaaacttggctaaggct
gcaggtttggcaacaatgatctccacaatgcgacctgatatcgataacatggatgagtat
gtcagaaatacaacagctcgagcctttgctgttgttgcatctgctctgggcatcccttct
ctgttacccttcctgaaagctgtctgtaaaagcaaaaaatcctggcaggccaggcacact
ggcatcaagattgtacagcagattgctattcttatgggttgcgctatcctgcctcatctc
aggagcttggttgaaattattgagcatgggctggtggatgagcagcagaaggttcgcacc
atcagcgctttggccattgctgctttggctgaggcagccactccctatggtattgagtca
tttgactctgtcctgaagcccttgtggaagggtatacgtcaacacagaggaaagggtttg
gctgcgttcttgaaggccattggttacttgattccactcatggatgctgagtatgcaaac
tactacaccagagaagtcatgctgattcttatcagagagttccagtctcctgatgaagag
atgaaaaaaattgtgttaaaggtggtaaagcagtgttgtggtacagatggtgttgaagca
aactacattaaaacagaaatcttgccacccttcttcaaacatttctggcagcacagaatg
gcactggacagaagaaattacagacagttggttgatacgactgtggagctggcaaataaa
gttggagcagcagaaattatttctagaattgtggatgatctgaaagatgaggctgagcag
tacagaaagatggtcatggaaacaattgagaagatcatgggaaatctgggggcagcagac
atcgatcacaaactggaagaacagctcattgatggtattttgtacgccttccaggaacag
accacagaggattctgtgatgctgaatggttttggcacagtggttaatgctctgggcaaa
agggtgaaaccctacttgccacagatctgtggtacagttttgtggcgtttgaacaacaaa
tcagccaaagtcaggcagcaggctgctgacctgatctctcgtactgcagttgtcatgaag
acttgtcaagaggaaaaactgatgggacacttgggtgttgttttgtatgagtacctgggt
gaagaatatcctgaagtactgggcagcatacttggagcgcttaaggctattgtgaatgtt
ataggtatgcacaagatgacaccaccaatcaaagacctgctgccacggttgacacctatt
ttgaagaacagacatgagaaagtacaggaaaactgtattgatcttgttgggcgtattgca
gacagaggtgcagagtatgtttctgcaagagaatggatgaggatctgctttgaactgctt
gagttattaaaagctcacaagaaagccatcagaagagccacagtgaacacttttggttat
attgcaaaagctattggacctcacgatgtattggccacactgctaaacaacttgaaagta
caggaaaggcagaacagagtatgtactacagtagcaattgctattgtggctgaaacatgc
tcacccttcacagtgctgcctgcactcatgaatgaatacagagttccagaactgaatgtc
cagaatggtgtgttaaaatcgctttctttcctgtttgaatacattggagagatgggaaaa
gattacatttatgctgttacaccattgcttgaagatgctttaatggacagggatctggtg
cacagacaaacagccagtgctgtggtgcagcacatgtcccttggtgtttatgggtttggc
tgtgaggattctcttaatcacttgttaaactacgtgtggcccaacgtgtttgaaacctct
cctcacgtcatccaggcagttatgggggctctggagggcctcagagtggcgattgggccc
tgcaggatgttacagtactgcttacagggtttgtttcaccctgccagaaaagtcagagat
gtttattggaagatctacaattcaatctacattggctcacaggatgctctgatagcacat
tacccaagaatctataatgatgacaagaacacctatattcgttatgaacttgattacatc
ttataa
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