Zonotrichia leucophrys gambelii (white-crowned sparrow): 135450214
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Entry
135450214 CDS
T09958
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135450214 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zle03041
]
135450214 (PRPF40A)
Spliceosome [BR:
zle03041
]
Complex A
U1 snRNP components
U1 related factors
135450214 (PRPF40A)
Complex B
135450214 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
135450214
NCBI-ProteinID:
XP_064574246
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All DBs
Position
7:1065997..1089901
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AA seq
1010 aa
AA seq
DB search
MSGGDSTAAAAAASPQPLPFSLPKPPPLMQLTPGDAVRPVGSGADQSPKSARLAARPDWP
AGKPVSLLAPLLPPRGEPEPLLPFGPAAPRPPLRGRLLGRCGGSLLSPAMRPGGVDRGSL
MMGHPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQMPGMMQSVMPGMM
MSHMSQAAMQPTVPPGVNSMDAQVGVTPPGTQTAHAVVSAVQQSSSSSSSASEEHSKQKS
TWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQT
KESRWAKPKELEDLEAMIKAEENSTKPEDAAAATSAPAAAGDAPSGASAAPAAESATATA
APAGAAPEGESAPAATTGDTDTASTATAEEQGQGSAAPGTQDGSADTAAAATDEAAKQEA
SGDAAAKKEDEDAQPVKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRY
SALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQ
MFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYCT
TWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQR
KNRESFQLFLDELHEHGQLHSMSSWMELYPAISSDIRFTSMLGQPGSTALDLFKFYVEDL
KARYHDEKKIIKDILKDKGFVVEVNTSFEDFVTVISSTKRATTLDAGNIKLAFNSLLEKA
EAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRDRFVKEPAFEDITLESE
RKRIFKDFLHVLEHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEDDDSHSKKKRQRS
ESRSVSERSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDVEREKDKKDRERDSEKERA
RQRSESKHKSPTKKRPGKDSGNWDTSGSELSEGELEKQRRTLLEQLDEDQ
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcggggactccacggccgcggccgccgccgcctccccgcagccgctgccgttc
tcgctgccgaagccgccgcccctcatgcagctgacgccgggcgacgccgtgcggccggtg
ggctcgggcgccgaccaatcgccgaagagcgcgcggctggcggcgcgccccgattggccg
gcggggaagcccgtcagcctgctggcgccgctgctcccgccccgcggggagcccgagccg
ctgctgcccttcgggcccgcggccccgcggccgccgctgcgcgggcgcctcctgggccgc
tgcgggggctccctgctcagccccgccatgcggcccggcggcgtcgaccgcggctctctc
atgatggggcaccccggaatgccccactacccccccatggggatgcaccccatgggccag
agaccccccaacatgcccccggtgccccacgggatgatgcctcagatgatgccccccatg
ggaggacccccgatggggcagatgcctgggatgatgcagtcggtgatgcctggcatgatg
atgtcccacatgtcccaggctgccatgcagcccacggttcctccaggagtgaacagcatg
gatgcacaagtaggagtaacccctcctgggactcagacagcgcatgccgtggtgtccgca
gtccagcagagctccagcagcagcagctctgccagcgaggagcactccaagcagaaatcc
acgtggacggagcacaagtccccggatggaagaacttattactacaacaccgagaccaag
cagtccacgtgggagaagccagatgacctcaaaacccctgctgagcaattgctgtccaag
tgtccctggaaggagtataaatcagattctgggaagccttattattacaattcccaaaca
aaggaatcccgctgggcaaaacccaaagagctggaggatcttgaagcaatgattaaagct
gaagaaaacagcacgaagccggaggacgcggctgccgccacctcggctccggccgcggcc
ggggacgctccgagcggggccagcgcggccccggccgccgagagcgccacggccacggct
gctcctgcaggagctgctcccgagggagaatctgccccggctgccaccacgggggacacg
gacacggccagcacggccacggccgaggagcagggccagggcagcgccgcccccggcacg
caggacggcagcgccgacaccgcggccgccgccaccgatgaggcggccaagcaggaggca
tcgggagatgctgctgcaaagaaggaggatgaggatgcacaaccagttaaaaaaacctac
acgtggaacacaaaggaagaggccaaacaagcatttaaagaactgttaaaagaaaagcgg
gttccatccaatgcttcctgggagcaggccatgaaaatgatcattaatgaccccagatac
agtgctttggcaaaactgagtgaaaagaagcaggcctttaatgcctacaaagttcagaca
gagaaggaggagaaggaagaagccagatccaagtacaaggaagccaaggaatccttccag
cgcttcctggaaaaccatgagaagatgacatccaccaccagatacaaaaaagctgaacag
atgtttggggagatggaggtgtggaatgccatttccgagcgggaccgcctggagatttat
gaggatgttctgttcttcctgtccaagaaggagaaggaacaagccaagcagctgcgcaag
aggaactgggaagctctgaagaacatcctggataacatggccaacgtcacctactgcacc
acctggtcagaggcccagcagtacctcatggacaaccccacctttgctgaggatgaggag
ctccagaacatggataaggaggatgccctgatctgttttgaggaacatatcagggccttg
gagaaagaggaggaggaagagaagcagaaaagtttgctgagggaaaggaggaggcaacgt
aaaaacagggaatctttccagctgtttctggacgagctgcacgagcacgggcagctgcac
tccatgtcctcctggatggagctgtacccagccatcagctccgacatcaggttcaccagc
atgctgggccagcctggatcaacagcgctggacctgttcaagttttatgtggaggattta
aaagctcgttaccacgatgagaagaagataattaaagacatcttaaaggataaaggattt
gtggtggaggtgaacacttcctttgaggattttgtcactgtcatcagctccactaaaaga
gccaccacgttggatgcagggaatatcaagctggctttcaacagtctgctggagaaggcg
gaggcgcgggagcgcgagcgggagaaggaggaggcccgcaagatgaagaggaaggaatcg
gccttcaagagcatgctgaaacaggccaccccccccatcgagctggatgctgtctgggag
gatatcagagacagatttgtgaaggaaccagcatttgaagacatcaccctggaatctgaa
aggaaaaggatatttaaggatttccttcatgtacttgagcacgagtgtcagcaccaccac
tccaagaccaagaaacattcgaagaaatccaagaaacaccaccggaagcgctcgcgttcc
cgctcgggctccgagtccgaggatgacgacagccactccaagaagaagcggcagcgctcg
gaatcgcggtcggtgtcggagcgttcttccagcgccgagtccgagaggagttacaagaag
tccaaaaaacacaagaagaagagcaagaagaggaggcacaagtctgattcaccagaatct
gatgtggaacgagagaaggacaagaaagacagagagagggacagtgagaaggaaagagcc
agacagagatctgagtccaagcataaatctcccactaagaaacggcctggaaaagattcc
gggaactgggatacctctggcagcgagctcagcgagggggagctggagaaacagaggagg
actcttttggaacagctggatgaagatcaatga
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