Zonotrichia leucophrys gambelii (white-crowned sparrow): 135450259
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Entry
135450259 CDS
T09958
Symbol
PMS1
Name
(RefSeq) PMS1 protein homolog 1
KO
K10864
DNA mismatch repair protein PMS1
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zle03400
]
135450259 (PMS1)
DNA repair and recombination proteins [BR:
zle03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
135450259 (PMS1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HATPase_c_3
HMG_box_2
HATPase_c
HMG_WDHD1
HMG_box_5
CHDNT
Motif
Other DBs
NCBI-GeneID:
135450259
NCBI-ProteinID:
XP_064574336
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All DBs
Position
7:15216945..15260427
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AA seq
933 aa
AA seq
DB search
MKQLPGETIRLLSSSQVITSVVSVVKELIENSLDASATGIDIKLENYGFSKIEVRDNGSG
IKVDDVPVMAIKHYTSKISSSEDLERLTTYGFRGEALGSICSVSEVLVTTKTAADDFSLQ
YALDSNGRVTSKKPSHLGQGTTVTVLNLFKNLPVRKQFYSTNRKCKEELKKVQDLLTAYG
IIKPDLRITLTHNKAVIWQKTRVSDHKMACMSVLGTAVMSSMVPFQHCCDYPEINLSGFL
PKAESDTSLTSLSSSERSFIFINNRPVLQKEILKLIRQYYSQVTQKDCTRLYPVFFLNIT
VPASAVDVNITPDKTQVMLHYKESVLLAVENVLKSLYGPLPAAVPGESNKTDVTSEDMFV
HRTDQTDVAVNEMGPSGNDELHAHTSFLSLSSDVQNCQAGKNAEICLNHQIFSGDNVHSC
LDKRELSKSDAFPDNSLNLLREEEQNGQNMADIQSNSVPVDPESKKANEHVESSDTIDKI
DKNEEALVPKDLPEISADSWSMGSAFKDILGDKMEPVKILIPGAGGTVSKQNEYTGEKSS
DPQSSDQSIKKKNVISEKFGRVTAYDLINSKIIKKPKSAFEFFTHECRPKLIDDNPKTSM
NDILLTIEEQWKNLNEEEKQNYEIKATKDQERYNREVKKANAQPMHRPAKEAEKHKAKLK
SSASDQQKLDKIFHNQIEKKGKLEQPVKIVPVPFSLSFCRRHLQRQERNVSDEHELFLIR
RQSFPDVWILATEKNVKLLNPYRLEEALLCKRLLMNHKLPVEKLDNPIVLTDSLLGGSQY
MAALYKMQKNYQSFHGSGYLSDPRLVANGFQIKVIEGVSAAESHLEIEGMANCLPYYGIS
DLKEILNAVVNRNAKEVYECRPLKVINYLEGEAVRLARQLPLHLSKEDVQNTIYRMKQQL
GKENKGCVHGRPFFHHLTDIPEVDKHNSMEIIQ
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagctgcctggagagacaattcggctcctttcaagttctcaggtgattacttca
gttgtcagtgtggtgaaggagctgatagaaaattccttggatgccagtgctacaggcatt
gatattaaactggagaattacgggtttagcaaaatagaagtgagagacaatggcagtgga
atcaaggttgatgatgtcccagttatggccatcaaacactacacctcaaaaatcagctct
tctgaggaccttgaaaggctgacaacgtacggcttccgtggggaagctttgggatcgatt
tgcagcgtatcagaagttttggtcaccacaaagacagctgctgatgatttcagccttcag
tatgctttggatagcaatggacgtgtaacctctaaaaagccttcccatcttgggcaaggt
actacagtaacagtcctaaatttgtttaagaatcttcctgtaagaaagcagttttactca
acaaatagaaaatgtaaggaagaactgaaaaaagtccaagatctactgacagcatatggt
atcataaaaccagacctgaggataacattaacacataataaggcagttatttggcagaag
accagggtatcagatcacaaaatggcctgtatgtcagttctgggaacagccgttatgagc
agtatggtaccttttcaacactgctgtgactatcctgagataaatctttctggatttctc
ccaaaagctgagtcagacacttctttgacaagcctttcaagttcagaaaggagtttcatt
tttataaataatcgtccggttcttcagaaggaaatactgaagttaattcgacagtactac
agtcaggtgacacaaaaggactgtactcgtttatatcctgttttctttttgaatattact
gtacctgcctctgctgtggatgtgaatataacacctgataaaacacaagttatgctgcat
tataaggaatctgtcttgcttgcagttgaaaatgtgttgaaatcactgtatgggccacta
cctgctgcagtccctggtgaaagtaataaaacagatgttacctcagaagacatgtttgtt
catagaacagaccaaacagatgtggctgttaatgaaatgggaccatctggaaatgatgag
ctacatgctcatacttcattcctttcactcagcagtgatgtgcaaaactgtcaagcagga
aaaaacgcagagatctgcttaaatcatcagatatttagtggtgataatgtacacagttgc
ctggacaaaagagagctttctaagagtgatgcctttccagacaattccttaaatttattg
cgtgaggaggaacagaatggacagaatatggctgatattcaaagtaatagtgttcctgtg
gaccctgagtctaaaaaagccaatgagcatgttgagagctctgatactattgacaaaata
gataaaaatgaggaagccttagtccctaaggacttacctgagatctctgctgatagttgg
agtatgggaagtgcatttaaagacattctgggagacaagatggaacctgttaagatcttg
attcctggagctggagggacagttagtaagcaaaatgaatacactggtgaaaaaagcagc
gatccacaaagctcagatcaaagcataaagaaaaaaaatgtgataagtgaaaaatttgga
cgtgtgacagcttatgacttaattaatagcaaaataataaagaaaccaaagtctgcattt
gaatttttcacacatgagtgtcgtccaaaattgatagatgataatccaaagaccagcatg
aatgacatcctgctgacaattgaagagcaatggaagaatttgaatgaagaggaaaaacag
aattatgaaataaaagccactaaggaccaggaacggtacaacagagaggtcaagaaagcc
aatgcacagccaatgcaccgaccagcaaaggaggcagaaaaacacaaagccaagctgaag
agttctgcatctgaccagcagaagcttgacaagatatttcataaccagattgaaaagaag
gggaaactggaacagcctgtgaaaattgtgccagtgcctttttctctgagtttctgtaga
cgtcaccttcagagacaagagagaaatgtttcagatgagcatgagcttttcctgatccgt
cgtcagagttttcctgatgtctggatacttgctactgaaaaaaatgtcaagttgctgaat
ccatatagactggaagaggccctgctatgtaagagattattgatgaaccataagcttcca
gtagagaaactggacaatccaattgtgttaacagacagtcttcttggtggatctcagtat
atggctgctctttataaaatgcagaagaattaccagagtttccatggatcaggttatttg
tcagatccaaggcttgtagcaaatggattccagataaaagtgatagaaggtgtttcggct
gcagaaagtcatctggaaatagaagggatggcaaattgtctgccatattatggaatttct
gatttgaaagaaattctgaatgcagtagttaacagaaatgcaaaggaagtatatgaatgt
aggcctctcaaagtgataaattacttggagggagaagcagtgcgtttagctcggcagctg
cccttacatttgtcaaaagaagatgtgcaaaacacaatttacaggatgaagcaacagctt
ggaaaggaaaataaaggctgtgttcatggtcgtcccttttttcatcatctaacagatatt
ccagaagttgacaagcacaactccatggaaattattcagtaa
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