Zonotrichia leucophrys gambelii (white-crowned sparrow): 135450419
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Entry
135450419 CDS
T09958
Symbol
IFIH1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04622
RIG-I-like receptor signaling pathway
zle05164
Influenza A
zle05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
135450419 (IFIH1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
135450419 (IFIH1)
05168 Herpes simplex virus 1 infection
135450419 (IFIH1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
zle04054
]
135450419 (IFIH1)
Enzymes [BR:
zle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135450419 (IFIH1)
Pattern recognition receptors [BR:
zle04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
135450419 (IFIH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
CARD_2
RIG-I_C
ResIII
DEAD
Helicase_C
CARD
SWI2_SNF2
DUF3638
Motif
Other DBs
NCBI-GeneID:
135450419
NCBI-ProteinID:
XP_064574619
LinkDB
All DBs
Position
7:28546161..28572783
Genome browser
AA seq
1005 aa
AA seq
DB search
MAEGTRDELFLYMISCFRPRLKQFIQVQPVLDRLPSLSAEDRDRVRAAAEQRGAAAGAEE
LLQAVERGPRGRGPIREFLQALEYGGCSLAACYANPSLSQLPSPAEEAEHDLCVHLVQLL
HGTLVDRMRAGPVAEKCLQMEIFQEEDVERIQTVIDNRGNRDGARELLSRIVQKKDWFSS
FLIALRETQHEDLADDLSGNTGENKQNGMEQTTSEETEVTSQPGYVTEENLKQEENVDDS
FSSENSLLETSIEKNSVMSESDVSIGDGSVSNLNGNLEQSCTTSDSDEDEVERRASPEPD
LTLRDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHLDKKRRASEPGKVIVLVNK
VPLVEQHLKREFSPFLKRWYQVIGLSGDSQLKISFPEVVRRNDVIISTAQILENSLLNAS
KEDEESVHLSDFSLIIIDECHHTQKEGVYNNIMRRYLKEKMKNRKLAKENKPLIPQPQIL
GLTASPGVGGATSYSKAEEHILKICANLDACRIMTVEEHASQLKNQVKEPSKKTVIADDK
KRDPFKERITEIMTEIQNYCQLHPKSEFGTQTYEQWVIREERRAAKEEKRRERVCAEHLK
KYNDALQINDTIRMVDAYNHLNNFYKEEKSKKTVRSDDDDDEPAVSKQDETDEFLIGLFH
AKKKQLKELTRNPENENEKLTKLRNTLMEEFTKTEEPRGIIFTKTRLSASALCQWIKDNP
KFEEVGIKAHYLIGSGHKSETKPMTQNEQREVIDKFRCGNVNLLIATTVAEEGLDIKECN
IVIRYGLVTNEIAMVQARGRARADESTYALVASDGSGAVERENVNIFREKMMYKAIQRVQ
KMPQEEYLDKIQTFQLQSIVEKQMKVVRDQRKTYKKNPSLIKFLCKNCSKPICSGEDIQV
IEDMHHVSVKKDFQSLYHTRENKTLQDKHADYQTNGEIICKDCGQAWGNMMVHRGLDLPC
LKIRNFVVVFADKKTTNNIFKKWGDLPIRFPSFDYAAHCPSSDED
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atggcagagggcacccgggacgagctgttcctctacatgatctcctgcttcaggccgcgg
ctgaagcagttcatccaggtgcagcccgtgctggaccggctgccctcgctgagcgccgag
gaccgggacagggtccgtgcggccgccgagcagcggggcgcggcggcgggcgccgaggag
ctgctgcaggccgtggagcgggggccccgcggccgcggcccgatccgcgagttcctgcag
gcgctggagtacggcggctgcagcctggccgcctgctacgccaaccccagcctgagccag
ctgccctcgccggcagaggaggccgagcacgacctctgcgtgcacctggtgcagctgctg
cacggcacgctggtggacaggatgcgcgccgggccggtggccgagaagtgcctgcagatg
gagatcttccaggaggaggacgtggagcggatccagactgttattgacaatcgtgggaac
agagatggtgcaagggagctactgagcagaatagttcagaagaaagactggttctcttct
tttttgattgccctccgtgaaacccaacatgaagaccttgcagatgatttaagtggaaat
acaggagagaataaacaaaatgggatggagcagactacgagtgaagaaacagaagttaca
agccaaccaggatacgtcacagaggagaatttgaaacaggaagaaaatgtggatgacagt
ttcagcagtgagaacagtctgttggaaacatccatagaaaagaattctgtgatgtcagag
tcagatgtctccataggagatggaagtgtcagtaacttgaatggaaacttggaacagagc
tgcacaaccagtgattcagatgaagatgaagtggagaggagagcctcacctgagccagat
ctgaccctgagagattaccagatggaagttgcaaagccagcattgaatggggagaatatt
atcatatgtctccctacaggcagtggtaagaccagagtggctgtttacattaccaaagat
cacttggataagaagagaagagcatcagagcctggaaaagtcatagtacttgttaataag
gttccattggtagaacagcatttaaaaagagagtttagtccattcctgaagcgttggtat
caggttattggattaagtggtgattctcagctgaaaatctcatttcctgaagttgtcaga
agaaatgatgtcatcatcagtacagcacagatccttgagaattcactgttaaatgcatcc
aaggaagatgaggaaagtgtccacttatcagatttttccctcatcatcatcgatgagtgt
catcatactcaaaaggaaggtgtctacaataacataatgagacgttacttaaaagaaaag
atgaagaacaggaagctggcaaaagaaaacaagccactgatcccacagcctcagattctg
ggacttacagcctcacctggtgtaggaggtgcaacatcctactcaaaagctgaagagcat
attctgaaaatctgtgccaatcttgatgcatgtaggattatgactgttgaagagcatgcc
tcccagctaaagaatcaggtgaaggaaccatctaagaagactgtgattgcagatgataaa
aaaagggatccatttaaagagagaatcactgagatcatgacagaaattcagaactattgc
cagctgcatccgaagtctgagtttggaactcagacatatgaacagtgggtgatcagagaa
gagagaagagctgcgaaagaagaaaaacggagggaacgtgtctgtgcagagcacttgaag
aaatacaatgatgctctccagataaatgacaccatccgaatggtggatgcctacaatcac
ctaaataacttctataaagaggagaaaagtaagaagacagtaaggagtgatgatgatgat
gatgaaccagcagtatcaaaacaggatgaaacagatgaatttctaataggtttatttcat
gcaaaaaagaaacagctgaaagagttgactagaaatccagaaaatgaaaatgaaaagcta
acgaagttgagaaatactttaatggaggagttcacgaagactgaagaacctcgaggaatc
attttcacaaagactcgtctaagtgcctctgctctttgccagtggattaaggacaaccca
aaatttgaagaagtgggaattaaggcccattatcttattggctctggacataagagcgaa
acaaagcccatgactcagaatgagcaaagggaagttattgataaatttcgatgtggaaat
gtaaatttactaattgctactactgtagctgaggaaggcctggacatcaaagagtgtaac
atcgttattcgctacggccttgtcaccaatgaaattgctatggtgcaggctcgcggtaga
gctcgagctgatgaaagcacctatgctcttgtggcttcagatggctcaggggctgttgaa
cgtgagaatgttaatatttttcgtgagaaaatgatgtacaaggccattcagcgtgtccag
aagatgccacaggaagagtatttagataagattcagactttccagttgcaaagtatagtg
gaaaaacaaatgaaggtggtgagagatcagcgcaagacatacaagaaaaatccttcacta
ataaaattcttatgcaaaaactgctccaagccgatatgttctggagaagacatacaagtt
attgaagacatgcatcatgtcagtgtgaaaaaagatttccaaagtctttatcatacaaga
gaaaataaaacactgcaagataagcatgctgattaccagacaaatggggaaattatatgc
aaagactgtggacaagcttggggaaatatgatggttcaccgaggtcttgacctgccttgt
ctaaagatcagaaattttgtggttgtgtttgcagacaagaaaacaacaaacaatattttt
aagaaatggggagacctgcccatcaggtttcctagttttgattatgcagctcattgtcct
tcaagtgatgaagattaa
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