Zonotrichia leucophrys gambelii (white-crowned sparrow): 135450596
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Entry
135450596 CDS
T09958
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
135450596 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zle03019
]
135450596 (BARD1)
04121 Ubiquitin system [BR:
zle04121
]
135450596 (BARD1)
03036 Chromosome and associated proteins [BR:
zle03036
]
135450596 (BARD1)
03400 DNA repair and recombination proteins [BR:
zle03400
]
135450596 (BARD1)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
135450596 (BARD1)
Ubiquitin system [BR:
zle04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
135450596 (BARD1)
Chromosome and associated proteins [BR:
zle03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
135450596 (BARD1)
DNA repair and recombination proteins [BR:
zle03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
135450596 (BARD1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_6
Ank
Ank_2
Ank_5
Ank_4
Ank_3
BRCT
BRCT_2
Ank_KRIT1
zf-C3HC4_2
zf-RING_5
zf-RING_10
zf-C3HC4_4
zf-C3HC4
NIBRIN_BRCT_II
zf-RING_UBOX
Prok-RING_4
RTT107_BRCT_5
zf-RING_2
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
135450596
NCBI-ProteinID:
XP_064574991
LinkDB
All DBs
Position
7:10532851..10576279
Genome browser
AA seq
802 aa
AA seq
DB search
MREALRGRSGNQPAPVSPLRPAAPSMAPPGHTWSHTRAALGRLEKALSCSRCAGVLREPV
SLGGQCEHVFCLSCVGDSVGSGCPVCHVPAWVQDAQINRQLDNMIQLCSQLRQLLSSHTA
GSAEETSTPPESELEKKSKKEQIKMWFSPRSRKIRCVVNRSQAGTKSTNLAQDTSSVYDF
FPSPPHEKPSKPTKKATQRQMKKMKKKHLADINKVWSLEKPEQKKAEKAPKEKCVTICSQ
PVVLCTQEPEASEHRPQQEPVKEADSSSNAEDVEVLPQVESPKKDNSEVVCSAAESKETQ
GAAETLLSGANEVTPLKRGREQCRLQGTPQSKRARRSERGIPGQAGRQAAASEQSLQGSP
ISPAHISSSAAKLTGTAMKTRSATLQVTNSPSLSESPSTPSTSKSCSQGATPLSPSVLKS
PAVNSIARRNYKGETLLHVASIKGDLAAVEELLKNGADPNVKDNAGWTPLHEACNHGHSE
VVQLLLRHRALVNTTGYQNDSPLHDAARNGHLAVVELLLLHGASRHAVNIFGLRPVDYAE
SKKMKSLLMLPVENESFSLTQPSEVLSSSQPRNGPLGILGSNLSVEQQKLLNKLAAVLKA
QRCTEFNSRVTHLVIPDVPMPTTVKCMMAVLAGCWVLKFEWVQACLQSSAREQEEEYEVQ
GGPRRGRLNREQLLPKLFDGCYFYFMGPFKQHQKSELLELVKAAGGQVLVRQPKPDSDVT
QTINTVSYHAEPTSDQRLCTHYVIYDAASKFQPQKIRQGKVWMAPSSWLIDCVMAFQLLP
VKGISNSSKDVKWARSGAAGKL
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgagggaggcgctgcgcggacgctcgggcaaccagccggccccagtcagccctctccgt
cccgctgccccctccatggcgccgcccgggcacacctggtctcacacccgcgccgcgctg
gggcggctggagaaggcactgagctgctcccgctgcgccggtgtcctgcgggagcccgtg
tccctgggggggcagtgcgagcacgtcttctgcctgtcctgcgtgggtgacagcgttggc
agcgggtgccccgtgtgccacgtgccagcctgggtgcaggacgcgcagatcaaccggcag
ctggataacatgatccagctgtgcagccagctgcggcagctcctgagcagccacaccgca
ggttcagcagaggagacatccacaccccctgagtcagagctggagaagaagagcaagaag
gagcagataaaaatgtggttcagccccaggagcaggaagattcgatgtgttgtgaacagg
agtcaggctggcactaaaagcactaaccttgctcaagacacatcttcagtttatgatttc
tttccttcccctcctcatgaaaagccctctaagccaacaaaaaaagcaactcagaggcag
atgaagaagatgaagaagaaacacctagcagacattaacaaagtgtggagcttagagaaa
cctgagcagaaaaaagctgagaaggctcccaaggagaagtgtgtgaccatctgcagtcag
ccagtagtgctgtgcactcaggaaccagaggcctctgagcacagaccccagcaggagcct
gtcaaggaagctgactccagcagcaatgcagaagatgtggaagttctaccacaggtggaa
tccccaaagaaagataacagtgaggttgtgtgctctgcagcagagagcaaggaaacacaa
ggtgctgcagagacactgctgtcaggagcaaatgaagtgacacccttgaaacgtggcagg
gagcagtgcaggctgcaggggactcctcagtccaagagagcaaggagaagtgagaggggc
attcctggccaggcaggcaggcaggctgctgcctcagagcagtctctgcagggctccccc
atctccccagcccacatttcctcctctgcagccaaactcactggcactgcaatgaagaca
agatctgcaacccttcaagtcacaaacagtccttcactttcagagtctccctctacccca
tccacttccaagagttgcagtcaaggagcaacaccactcagtccttctgtgctgaaatcc
cctgctgtcaactccattgccagaaggaattacaagggagagactttgctccatgttgct
tccatcaagggtgacttagcagctgtggaggagctgctgaaaaacggggcagatcccaat
gtcaaagataatgctggctggacaccactgcacgaggcgtgcaaccacgggcacagcgag
gtggtgcagctgctgctgcggcaccgggcgctggtgaacaccacgggctaccagaacgac
tcgccgctgcacgacgccgccaggaacggccacctggccgtggtggagctgctgctgctg
cacggcgcctcccgccacgccgttaatatatttggtctgcggcctgtggactacgcagaa
agcaaaaagatgaaatctctgctcatgttaccagtggagaatgaatcattttcactcacc
cagccctctgaggtgctgagctccagccagccaagaaatggaccccttggtatactgggg
agcaatcttagtgtggagcagcagaaattgctgaacaaattagcagcagtcctgaaggcc
cagaggtgcactgaatttaacagcagagtaactcacctcgttatccctgatgttccaatg
ccaaccactgtcaagtgcatgatggctgttctggctggatgttgggtcctcaagtttgaa
tgggtgcaagcctgcctgcagagctcagctcgagaacaagaggaggagtacgaagtgcaa
ggtggcccccggcgcgggcggctcaacagggagcagctgctgcctaagttatttgatgga
tgctacttctattttatgggacctttcaaacagcaccagaagagtgagctgctggagctg
gtgaaagcagcaggtggccaggtgctggtcaggcagcccaaaccagacagtgacgtgacc
cagaccatcaacaccgtgtcctaccacgccgagcccacctctgaccagaggctctgcact
cactacgtcatctatgacgcggcttccaagttccagccgcagaaaatccgccagggcaag
gtgtggatggccccctccagctggctcatagactgtgtgatggcatttcagctcctgcct
gtgaagggaatatcaaacagcagcaaggatgtaaaatgggctcggtctggggcagctggg
aagctctga
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