Zonotrichia leucophrys gambelii (white-crowned sparrow): 135450859
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Entry
135450859 CDS
T09958
Symbol
PTCH2
Name
(RefSeq) LOW QUALITY PROTEIN: protein patched homolog 2
KO
K11101
patched 2
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
135450859 (PTCH2)
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Motif
Pfam:
Sterol-sensing
TRA2_N
Patched
MMPL
Motif
Other DBs
NCBI-GeneID:
135450859
NCBI-ProteinID:
XP_064575510
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All DBs
Position
8:complement(21104488..21125835)
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AA seq
1429 aa
AA seq
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MGAAAASAANGSGGGGAAPAPPAPXLPFRGAAGGRRRTHSPPSAPAPARPRRAHGGRRRA
RPHITGVPSPASRPAMPAEPPRAAPPLRAARRKPLPEGRAVGQRTPLWLRARFQALLFAL
GCRIQRHCGKVLFVGLLVFGALAVGLRVASIETDIEHLWVEAGSRVSQELRYTKEKLGEE
SVYTSQMLIQTPKKEGDNILTQEALQLHLEAALAASKVQVSLYGKSWDLNKICYKSGVPI
IENGMIERMIEKLFPCVILTPLDCFWEGSKLQGGSAYLPGRPDIQWSNLDPLQLMEELGQ
FTSLEGFKELLDKAEVGQAYMERPCLDPRDPQCPSSAPNKQSQQSPDIPAELSGGCHGFS
RKFMRWQQELILGGTTKDSQGKLLRAEALQTMFLLMSPRQLYEHFKDDYEIHDISWSEEK
AGAILEAWQRKFVELAQDSIPPNATQSVHAFSTTTLNDIMKSFSDVSVIRVAGGYLLMLA
YACVTMLRWDCSKSQGAVGLAGVLLVALSVASGLGLCSLLGISFNAATTQVLPFLALGIG
VDDMFLLAHAFTETSQHIPFKERTGECLKRTGTSVALTSVSNMIAFFMAALVPIPALRAF
SLQAAVVVVFNFAMVLFVFPAILSLDLHRREKRRLDILCCFYSPCSSRVIQIQPQELADA
NDNHACHPSPYGHPGMATSTQITTTVQAFTRCDPSGHHIVTVLPPTSQVCTSPAILLPHS
DPLGSQVFAPSSSTRDLLSQLDEAKGGRECVPLPFCRWSLADFAREKYAPLLLRTRTKVV
VVVLFLALLGLSLYGTTMVHDGLYLTDIVPRDTKAHAFISAQFKYFSFYNMFIVTKGGFH
YPGAQAALLSLHQAFSTVKYVVREGNRDLPKMWLHYFQDWLRGLQATFDRDWQAGRITHD
SYRNGSEDGALAYKLLIQTGNKKEPFNFNQLTTRRLVDENGIIPPDTFYICLTVWASNDP
LGFAASQANFYPPPPEWIHDKYDTTGENLRIPAAQPLEFAQFPFYLSGLRRTSDFVEAIE
SVRAICQEAAQRHGVLSYPSGYPFLFWEQYIGLRHWFLLAISILLACTFLVCALLLLNPW
TAGIIVSILAMIAVELFGIMGLMGIKLSAIPVVILIASVGIGVEFTVHVALGFLTAAGSR
NVRSAAALEHTFAPVMDGAVSTLLGVLMLAGSEFDFIMRYFFAVLTILTLLGLLNGLVLL
PVLLSVIGPPPEASLVDNGPCLPPPESIPPCLGPGGLYVRRAPAWPATFPEPSDTEHYTE
SVGPGSPRGPFVVPPAPAHILLEAGKDPSFPRITVLKPYKDSLEAQGKKEASGPQPAAPL
PFGEPCTTLPRDPPQPCPAGTRPAPPAALPTYSTHLQGPAGSYTTVTATASVTVALHPSL
PGSYPAFSPEGFTSGERDCLDEPSTSGAAVPDTFEMQNMGHHHGAGAWR
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgggcgctgccgcggcgtcggcggccaatgggagcggcggcggcggcgcggccccggcg
ccccccgcccccngcctcccctttagaggcgcggcgggcggccggcggcgcacacacagc
cctccatccgcaccggcaccggcacggccccgccgcgcgcatgggggccgccgccgcgct
cggccccacataacgggggtgcccagccccgccagccgccccgccatgccggccgagccc
ccccgcgccgcgccgccgctccgcgccgcccgccgcaagccgctgcccgagggcagggcc
gtgggccagaggaccccgctgtggctgcgggcccgctttcaggcgctgctcttcgccctg
ggctgccggatccagcggcactgcgggaaggtgctcttcgtggggctgctggtgttcggg
gcgctggccgtgggactacgggtggcctccatcgagaccgacatcgagcacctctgggtg
gaagcgggcagccgggtgagccaggagctgcgctacaccaaggagaagctgggcgaggag
tccgtctacacgtcccagatgttgatccagaccccgaagaaggagggtgataacattctg
acacaggaggccctgcagctccacctcgaggcggccttggccgccagcaaggttcaagtc
tccctgtacggaaaatcgtgggatttgaacaagatctgctacaagtcaggtgtccccatc
attgagaatggcatgatcgagaggatgatagagaagctgttcccctgtgtgatcctgaca
ccgctggactgcttctgggaaggctccaagctgcagggaggctcagcctatctcccgggc
cgcccagacatccagtggagcaacctggaccctctgcagctgatggaggagctggggcag
ttcacatccctggaaggcttcaaagagctgctagacaaggcagaggtgggacaggcttac
atggagcggccctgcctggacccccgggacccccagtgtccctccagtgcccccaacaag
cagagccagcagagccccgacatcccggccgagctctcggggggctgccacggcttctcc
aggaagttcatgcgctggcagcaggagctgattttaggtggcacgaccaaagactcccag
ggcaagctgctacgcgccgaggccctgcagaccatgttcctcctcatgagcccccggcag
ctctatgagcacttcaaggatgactacgagatccatgatatcagctggagcgaggagaag
gcaggagccatcctggaggcctggcagaggaaattcgtggagctggcacaggactccatc
cctcccaacgccacacagagtgtccatgctttctccaccaccacactcaacgacatcatg
aagtccttctctgacgtcagcgtcatccgggtggctgggggctacctcctcatgctggcc
tacgcctgtgtcaccatgctgcggtgggactgctccaagtcccaaggggctgtgggcctg
gctggggtcctgcttgtggctctctccgtcgcctctggcctggggctttgctcactgctg
ggcatctccttcaatgcagccaccacccaggtcctgcccttcctggccctcggcattggg
gtggatgacatgttcctcttggctcacgccttcaccgagacgagccagcacatccccttc
aaggagcggacgggtgagtgtctgaagcgcacggggaccagcgtggctctcacctctgtc
agcaacatgattgccttcttcatggcagccctggtgcccatccctgccctgcgtgccttc
tccctccaggctgcagtggttgttgtgttcaacttcgccatggtgctctttgttttccct
gccatcctgagcctggacctgcaccgccgggagaaacgccggctcgacatcctctgttgc
ttctacagcccttgctcctcaagggtcatccagatccagcctcaagagcttgctgatgcc
aacgacaaccatgcctgccacccatctccttatgggcaccccggcatggccaccagcacc
cagatcaccaccaccgtgcaagccttcacccggtgtgacccctcgggccaccacattgtc
actgtcctgccacccacctcccaggtgtgcacctcacctgccatcctgctgccccacagt
gatcccttgggctcgcaggtcttcgccccatccagctccacccgggatctgctgtcgcag
ctggatgaggccaagggtggccgggagtgtgtccccctgcccttctgccgctggagcctc
gctgatttcgcccgggagaagtacgccccactccttctgcgcacccggaccaaggtggtg
gtggtggtgctgttcctggcactgctagggctgagcctctatggcaccaccatggtacat
gatggcctctacctgacggacatcgtgccacgggacaccaaggcacacgccttcatctcg
gcccagttcaagtacttctccttctacaacatgttcattgtcactaagggtggattccac
tacccgggagcccaggctgccctgctgagcctgcaccaggccttcagcaccgtcaagtac
gtggtgcgggagggcaaccgagacctgcctaaaatgtggctccattacttccaggactgg
ctgagagggcttcaggccacctttgacagggactggcaggctgggcgcatcactcatgac
agctaccgcaatggctccgaggatggggcactggcatacaagctcctcatccagaccggc
aacaagaaggagcccttcaacttcaaccagctgaccacgcggcgactggtggatgagaat
ggcatcattccccccgacaccttctacatctgcctgacagtgtgggccagcaacgacccc
ctgggctttgctgcctcccaggccaacttctaccccccaccccccgagtggattcatgac
aagtacgacaccacaggcgagaacctgcgaatcccagcagcccagccactggagtttgcc
cagttccccttctacctgagcgggctgcgtcgcacgtctgactttgtggaggcgattgag
agcgttcgggccatctgccaggaggctgcgcagcgccacggcgtgctgagctaccccagt
ggctaccccttcctcttctgggagcagtacatcggcctgcggcactggttcctgctggcc
atcagcatcctgctggcctgcaccttcctcgtgtgcgccttgctgctgctcaacccctgg
accgccggcatcatcgtctccatcctggccatgattgctgtggaattgtttggcatcatg
gggctgatgggcatcaagctgagcgccatccctgtggtcatcctcattgcctcggtgggc
atcggtgtggagtttactgtccatgtggccctgggcttcctgacagctgcggggagcagg
aacgtgcgctcagctgcagcactggagcacacttttgcacctgtgatggatggtgctgtt
tccaccctcctgggtgtcctcatgctggctggctctgagtttgatttcatcatgaggtat
ttctttgcggtgctgaccatcctgacgctgctggggctgctcaatgggctggtgctgctg
cccgtgctgctctctgtcatcgggccaccccctgaggcatccctggtggataatggcccc
tgcctacccccaccagagtcgatacccccatgtctgggccctgggggactgtacgtccgg
cgtgctccagcctggcccgccaccttccctgagccctctgacacggagcactacacggag
agcgtggggccaggcagcccaaggggacccttcgttgtgcctcctgccccagcacacatc
ctactggaggctggcaaggaccccagcttcccccgcatcactgtgctgaagccctacaag
gacagcctggaggctcaggggaagaaagaggcgtctggccctcagcctgcagcccccctg
cccttcggggagccgtgcaccacgctgccccgagatcctcctcagccctgcccagcgggc
acccggccagcgccccctgcagccctgcccacctacagcacccacctgcagggtcctgcc
ggcagctacaccaccgtcacggccaccgcgtcggtgacagtggccctgcacccctcactg
cccggctcctaccccgccttcagccctgagggcttcaccagtggcgagcgggactgcctg
gacgagcccagcaccagcggcgccgctgtgcccgacacctttgagatgcagaacatggga
caccaccacggggcaggtgcctggcgctag
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