Zonotrichia leucophrys gambelii (white-crowned sparrow): 135450861
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Entry
135450861 CDS
T09958
Symbol
SMG7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135450861 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zle03019
]
135450861 (SMG7)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
135450861 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
135450861 (SMG7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
135450861
NCBI-ProteinID:
XP_064575516
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All DBs
Position
8:complement(7376189..7428097)
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AA seq
1192 aa
AA seq
DB search
MSLLCAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
KTRWSVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHITVI
NLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLALFMSFLGVLCKCPLQNDYQEDSGAAYP
LPAVKVSMDWLKLRPSVFQEAVVDERRYIWPWLISLLNSFQPHEEDLSSNNATPLPEEFE
LQGFLALRPSFRNLDFSKGHQAITGDKEGQQRRIRQQRLIFTGKWIADNQPRLIQCENEV
GKLLFVTEIPELLLEDPSEAKESLTLQETSMVEPLCADGSPGLKSVLSSGRSLSNSCDAG
EKPMVTFKENIKPREMNREQGRIYPPKDIARERRDFSKGIVANKNDGKKDNNKRKNETKK
CGLEKMQEAGKQNVAVQVKSQTEMRKTPVSEARKTPVTQTPSQASSSQFIPIHHPGAFPP
LPSRPGFPPPTYVVPPPVAFSMSTGYTFPGGVSVPGTFLQPTAHSPAGNQVQGGKQSHIP
YSQQRPSGPGPMTQGPQQTPPPSQQPLSSLPAQATAAQSASQLQVQALAQQQQQSPTKAV
QGLGKSPPHHSGFQQYPQTDSSKQLWNPPQVQGSLGKIMSVKQPYYLQAQDPLKLFEQSL
QPPVMQQQPLEKKMKPFPMEPYNQNPSEVKVPEYYWDSSYGMTDNRVMSQQSGMDRRGKR
QGVFRSEQDAVSRMTFEDPKSSPLLPPDLLKSLAALEEEEELIFSNPPDLYPALLGPLAS
LPGRSLFKSLLEKPSELMSQSSSFLSLSGFSLNQERYSNNSMFNEVYGKNINTSTKTEVT
PSVAHQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHNSVPFS
NFGPIGTPDNRDRRVADRWKTDKPAMGGFGLDYLPTTSSSSESSWHQSSAPSGTWAVQGP
PAMEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGAMNPPH
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgctgtgcgcgcagtatctccggcaggcagaagtcctgaaggctgacatgaca
gattcaaagctgggtccagcagaagtctggacatccagacaggctctacaggacttatat
caaaaaatgctagtgactgatttggaatacgctttagataaaaaagtggagcaggacctt
tggaatcatgcctttaaaaatcagatcacaacactccagggtcaggcgaaaaacagagca
aatccgaatcggagcgaagttcaggcgaacctttctctgtttttagaggcagctagtggc
ttctacacacagttactccaggaattgtgcacagtttttaacgtggacctgccgtgccgt
gtgaagtcttcccagctggggatcattagcaataaacagacgcacaccagcgccatcgtg
aagccgcagtccagctcctgctcctacatctgccagcactgccttgtccacctgggagat
attgctcgctataggaatcagaccagccaggcagagtcttactatagacatgcagctcag
cttgtcccttctaatggtcagccttataatcagttggctatcctagcttcctccaaagga
gaccacttgaccacaattttctactactgcagaagcattgctgtgaagtttcctttccca
gctgcctccactaacctacaaaaagcactttctaaagcactggaaagtcgtgatgaggtg
aagactcgatggagcgtgtctgacttcatcaaggcatttattaaatttcatggccatgtg
tacctgagtaagagcttggagaagctgagccctcttcgagaaaagctggaagaacagttc
aagaggttgttgttccagaaggccttcaactctcagcagttagtccatattactgtgatc
aacctgttccagctgcaccacctgcgggacttcagcaacgaaacggagcagcacagctac
agccaggatgagcagctctgctggacacagctcctggctctcttcatgtcatttcttgga
gttctgtgcaagtgtcctttacaaaatgactaccaggaggactctggggctgcctatcct
cttccagctgtgaaggtttccatggactggctgaaacttaggcccagtgttttccaggag
gctgtggttgatgagagacggtacatatggccctggctgatctctcttctaaatagtttc
cagcctcatgaagaagatctatccagtaataatgcaaccccgcttccagaagaatttgag
ttgcaaggattcctggctctgaggccctcgttcaggaacttggatttttccaaaggccac
caagcaattacaggggataaagaagggcagcaacgccggatacggcagcaacgcctgatc
ttcacaggcaaatggattgctgataaccagccaaggttgattcaatgtgaaaatgaggta
ggaaagctcttgtttgtgacagagatcccggagctcttactggaggaccctagtgaagcc
aaagagagtctcaccttgcaggagacatccatggtggagccactgtgtgctgatgggagc
cctggactcaaatcagtgctgtcctctggcagaagcctgagcaacagctgtgatgcagga
gaaaaacccatggtcaccttcaaagagaatatcaagccccgggagatgaacagagagcaa
gggcgcatctaccccccgaaggacatagcgagggagaggcgggactttagcaaaggaata
gtagcaaataagaacgatggcaagaaggataacaataaaaggaagaatgagaccaagaaa
tgtggcttggagaagatgcaggaagcaggaaagcagaatgtggcagttcaggtgaaatcc
cagacggagatgaggaagactccggtatctgaagccaggaaaacacctgtaactcagact
ccaagccaggccagcagttcccagttcatccctattcatcacccaggagccttccctccc
cttcctagccggccaggatttcctcctccaacctatgttgtcccccctcctgtggctttc
tccatgagcacggggtataccttcccaggtggtgtttctgtcccaggaaccttcctccag
cccacagctcactcgcctgcaggaaaccaggtgcaaggtgggaaacagtcccacattcct
tacagccagcaacggccctctggaccagggccaatgacccagggacctcagcaaacacca
cctccttcccagcaacccctctcatctttaccagctcaggcaacagcagcacagtccgca
agccagttacaggtgcaagctctggcccagcagcagcagcagtcccccacgaaagcggtg
cagggcctggggaagagcccaccacaccactctggattccagcagtatccacagacagac
tcgtcgaagcagctctggaacccccctcaagtccaaggctccctggggaagatcatgtct
gtaaagcagccctattacctgcaggcccaggaccctctcaaactctttgaacagtcatta
cagcctcctgtgatgcaacagcaacctctggagaaaaaaatgaagcctttcccaatggag
ccatataaccagaacccctcagaagtcaaggtgccagaatattactgggactcttcctat
ggcatgacggacaacagggtgatgagccagcagtcgggcatggaccgcagggggaagcgg
cagggagtgtttcgctccgagcaggatgctgtctccaggatgacctttgaggaccccaag
agctcccctctgcttcctccggacctgttaaagagtctggctgccttggaggaggaggaa
gagctgattttctctaatcctcctgatctttacccagctctgctggggcctctcgcctct
cttcctggacgaagcctctttaagtccctgctggaaaaaccatcagaattgatgtctcag
tcatcatctttcctgtccctcagcggcttttctctaaatcaggaaagatattcaaacaac
agcatgttcaatgaggtatatggaaaaaacatcaataccagcacaaaaacagaagtcacc
ccttcagttgcccatcaggagacttcactctattctctctttgaagggactccgtggtct
ccatcccttccagccagctcagatcattcaacaccagccagccagtctcctcactcctcc
aaccccagcagcttgccaagctcccctccaacccataaccacaattctgttcctttctcc
aactttggacccattgggactccggacaacagagaccggagagttgcagaccgctggaaa
acagataagccagcaatgggagggtttggtctggactatctcccaacaacatcgtcctct
tcagagagcagctggcaccagtccagtgctcccagtggtacctgggcagtgcaaggccct
cctgccatggaggactcctctgctgtgcttatggagagcctgaagtccatctggtccagt
tccatgatgcaccccggcccctcggccctggagcagctgttgatgcagcagaagcagaag
cagcagcgcggacaaggtgccatgaacccgccgcattga
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integrated database retrieval system
