Zonotrichia leucophrys gambelii (white-crowned sparrow): 135450863
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Entry
135450863 CDS
T09958
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135450863 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zle03021
]
135450863 (PCF11)
03019 Messenger RNA biogenesis [BR:
zle03019
]
135450863 (PCF11)
Transcription machinery [BR:
zle03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
135450863 (PCF11)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
135450863 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DNA_pol3_a_NI
DUF6980
Ycf2
Motif
Other DBs
NCBI-GeneID:
135450863
NCBI-ProteinID:
XP_064575527
LinkDB
All DBs
Position
1:82699594..82720675
Genome browser
AA seq
1700 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESNAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSSIASVPAPSKQHMSPTPHMTVKPPHQTAVQSEKNKPSPSPPLHDIKIVNRDPRLNRM
GQHSSHTKDQSHRKEFSPSVTSQSETKGSKTAQAEKQNSTKSEKSKASEKTQKKELEQSK
AKSKSPSPLKNKLPDTKDSKNQECESTKVSDISKRDPRLKRHLQDKSEGKEEEVKEKRRN
TEKKEKEEHKTCEHRPVGSRNKVINGAVQKQDTTTEESEKQGGKQGRSSSRKRSRSRSPK
ARSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEGTQAARDERNSN
KRNVKQEVRDPRRLKKAQEERPQETATQHSAKASPDPKENAENWQGSKSGKRWKSGWEES
KNSQQNDEHQALVKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANDRLTSGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHIPDALLSGIECEQAKAKRGAQFD
RKEPFAERSRRHSPVSGTTRPFAENLSPLESRRRLEDQRATKGARGSDPYDSWGESDEFR
DALRQQGKSTAEFQKTDGDALCRFDNREERQLLGQAGVREEPRSPFTERFKRARYEDPEK
APFPESPGSRFGGIEAKQRISALMEDRPLFDGSPRPTAARVAVDGQGSPFVDGPAAGSSS
RIDGPAGQAAMRFEGPLVGTGASQFDGPLAGAGGAGALRFDGPPGQLAGSLRFEGPSGQV
GGGGPLRFEGPLGPLRFEGPAGQPVGGARFEGPGVGLRFEGPHGQPSGGLRFEGPHGQPM
GPRGQPGGGLRFEGPHGQPLGPHGQPGGSLRFDGPHLQPLGPHGQLGGGLRFEGPHGQPM
GPHGPSGGGLRFEGPHGPSGGGLRLDGPRGQPGLGPRLIDGPVHQGAGLRFDGPLGRAGP
RFDGCHGAGFDGQPGQLSLLQRFDGIHGQPGPRLASGQQAQARFETAIPQRFDGPHQPAS
RFDLPLGLQGARFENVANHPASRLEMSPYGQGGPFVDHPGQGYNGPAHGMQFQRPDIFDG
SPGPNFNGPAGPGAQNFPLRAAGHYFEEKGLQGPQYGNFSNMPMGGNQVSLMSAQTGPYG
QGQQYLPNPGSFVQNPAGGLSHSYPDNHLGQVDVNELFAKLLKTGILKLSKTDSASAQAN
ETSAQPNAEEEDDDQNEDQNVPDLTNFIVEELRQRYDSVINRLYTGIQCYSCGMRFTTSQ
TDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAHE
EVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIY
HPSCYEDYQNTSSFDCTPSPSKTPSENPLNIMLDIVKQETEESCDSPKIKEEPEDTPPPA
CAEESTPASTEIKTEPEDSV
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggcagcagcgaggcccgggaggacgcgtgccgcgac
taccagtcgtctctggaggacctgacgttcaacagcaaaccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctgcccgttatgtacctaatggattccattgtc
aagaatgtgggaagagagtatctcacagcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactatatgcacttgatgtcagagtcaactcatta
gatcctgcctggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctaatgcacctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcaattgcttgcaaagcaaaaacagttgttagaacttcagcaaaaaaag
ctagagctggagctggaacagactaaagcacagttggctgtatctcttagtgttcagcag
ggatcatctagtatagcttcagttccagcaccttccaagcaacacatgtctcccacacct
catatgacagttaaaccacctcatcaaactgctgtgcaatctgaaaaaaacaaaccatct
ccaagtcctccacttcatgacatcaaaatagtgaacagggatcctcggcttaatagaatg
ggtcaacattcttctcatactaaagatcaatctcacaggaaagaattttcaccgagtgtg
accagtcagtctgagaccaagggaagcaaaacagcacaggctgaaaaacagaactcaacg
aagtcagaaaaatcaaaagcaagtgaaaaaacacagaagaaagaacttgaacagtccaaa
gcaaaatctaaatcgccatcccctttgaaaaataagctgcccgatactaaagacagtaaa
aaccaggaatgtgaaagcactaaggtttctgacatcagtaagcgggatccaagactgaaa
agacatcttcaggataagtcagaagggaaggaagaggaggtcaaagaaaagaggagaaat
acagaaaagaaggaaaaagaggagcataagacttgcgaacatagaccagtagggagcaga
aataaagtgattaatggtgctgttcagaaacaagacacaactacagaggagtcagaaaaa
cagggtgggaaacaaggaagatcaagtagtcgaaaacggtcacgatcacgctctcctaag
gcaagatcaccatctacacactctccaaaaagacgagagaggagatcacctaaaagaaga
cttcggagtttatctcctacttcatcgactcctaaaattggaaagatacgtcagataggc
cccaagcagtctcatgttgaagaaggcacacaagcagcaagagacgaaagaaactctaat
aagagaaatgttaaacaagaggtgcgtgatccaaggagattgaaaaaagcccaagaagaa
agaccccaagagacagccacccagcattctgcaaaagcttctccagatccaaaggaaaat
gcagaaaactggcaaggatccaaatcaggcaagaggtggaaatctggttgggaagaaagt
aaaaattcacagcagaatgatgaacaccaagcacttgttaaatcccctcaccaaagacat
cgggaaaactggccggctggtaaaggaattctatcaccccgagcaccaaagcagcagcac
cggttaagtgtggatgccaatttacagattcccaaagaattgacatctgcaagtaaaaga
gaattacttaagaaggctaatgaccgcttaacatctggtgaaataacacaagatgagttt
ctcatggtcgctcatcagatccgacagctgttccagtatcaggaaggaaagcacagatgt
aatgtctgggatagccctacagaggaaaaatgtggtttgaaaaagaaacctcttctatcg
gatgcagaattaacgtattatgaacataaagctaaactaaaaaggacacaagttcagcat
tcgttgtcaaggcttgatttgttggatcctgatgatattttggattatcatatacctgat
gcactgctttctggaatagaatgtgagcaggcaaaagccaagcggggagcacagtttgac
agaaaagagccatttgcagaaagatcaaggaggcactcgcctgtaagtggcactacaaga
ccatttgctgaaaacctgtcaccgcttgagagtcgacgaagacttgaggaccagcgtgct
actaaaggagcaagaggttctgatccttatgacagctggggagaatcggatgaatttaga
gatgctctcagacaacaggggaaaagtacagcagagttccagaaaacagatggagatgca
ctttgtaggtttgataatcgtgaagaaagacagcttcttgggcaagctggtgttcgagag
gaaccaaggtcaccgttcactgaacgtttcaaaagagctaggtatgaagatccagagaaa
gcaccatttccagaaagtccaggatcgagatttggaggtattgaagcaaagcagaggata
agtgcactgatggaagacagacctctgtttgatggctcacctagaccgactgctgcaagg
gttgcggtagatggacaaggcagtccttttgttgatggtcctgctgctggttcaagctcc
agaattgatgggccagctggacaggctgctatgagatttgaggggcctttggtgggcaca
ggtgcatctcagtttgatggaccactggcaggagcagggggagctggagccttaagattt
gatgggccaccagggcagctggcagggtccctgagatttgaaggaccctcaggccaggtt
ggcggaggaggcccgctgcggtttgagggacctcttgggcctttgcgatttgaggggcct
gctgggcagcctgtaggtggggctagatttgaaggtcctggagttggtctcaggtttgag
ggtcctcatggtcagccttcaggtggtctcaggtttgagggacctcatggtcaacctatg
gggcctcggggtcaaccagggggtggtctcaggtttgagggaccccatggtcagcccttg
gggcctcatggtcaaccagggggtagcctcaggtttgacgggccacatttacagccattg
gggccccatggacaacttggaggtggcctcaggtttgagggcccacatggtcagcccatg
gggccacatgggccatcaggtggtgggctcaggttcgagggaccacatggaccatcaggt
ggtgggctgagactggacggaccacgtggtcagccgggtctaggtcctaggttgattgat
ggaccagtacaccagggagctggacttagatttgatggtcctcttggtcgggctggtcca
agatttgatggctgtcatggagctggatttgatggtcagcctggacagctgtctctcctg
caaagatttgatggaattcatggacagcctggtccaaggttggcatctggccaacaggca
caagcaagatttgaaacagccatacctcaaagatttgatggacctcaccagccagcctct
aggttcgacttgcccctcggccttcagggtgcacgttttgaaaatgtagctaaccatcct
gcctcaagactagaaatgtcaccatatggacaaggtggtccgtttgttgaccatcctggc
cagggctacaatggaccagctcatggaatgcagttccagagacctgatatatttgatggc
tcacccggaccaaatttcaatgggccagctggcccaggagcacagaacttcccactgaga
gcagctggacattatttcgaagaaaaaggtctccagggtcctcagtatggaaatttcagt
aatatgccaatgggaggtaatcaggtttctctcatgtctgctcaaacaggaccttatggc
caaggtcagcagtatttgccaaatcctggaagttttgtccagaaccctgcaggaggcctt
tcacattcatatcctgataaccaccttggacaggttgatgtgaatgagttgtttgctaaa
ctgctgaaaacagggatcctcaaattgtctaaaactgattccgcttcagcacaagcgaat
gaaacatcggcccagccaaatgctgaagaagaagatgatgatcagaatgaagatcagaat
gttccagacctcactaacttcatagtcgaagaacttagacagcgttacgatagtgttata
aatcggctgtacactggaattcagtgttactcctgtggaatgagattcaccacttcacag
acagatgtttatgcagatcacttggattggcattatcgccagaaccggacggaaaaagat
gttagcagaaaaattacacacaggagatggtactacagtttaacagactggattgaattt
gaagaaattgcagatctagaggagcgtgctaaaagccagttctttgaaaaagctcatgaa
gaggttgtgttgaagacgcaggaagctgccaaagagaaggagtttcagagtgtcccagct
ggaccagctggagcagtggagagttgtgaaatttgccaagaacaatttgaacagtattgg
gatgaggaagaggaagagtggcacttgaagaatgctatcagggtagatgaaaagatttac
catccatcatgttatgaagattaccagaatacatcatcatttgattgcacaccatctccc
agcaagactccttcagaaaatccactaaatataatgttggacattgttaaacaagaaaca
gaagagtcctgtgactcacctaaaatcaaagaagaacctgaagacacccctcctcctgcc
tgtgcagaagagagcacacctgcatctacagaaatcaaaacagaacctgaggattctgtt
taa
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