Zonotrichia leucophrys gambelii (white-crowned sparrow): 135450893
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Entry
135450893 CDS
T09958
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zle03000
]
135450893 (RC3H1)
04121 Ubiquitin system [BR:
zle04121
]
135450893 (RC3H1)
Transcription factors [BR:
zle03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
135450893 (RC3H1)
Ubiquitin system [BR:
zle04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
135450893 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_10
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
135450893
NCBI-ProteinID:
XP_064575577
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Position
8:complement(7638071..7711534)
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AA seq
1124 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGAEDTKHYEEGKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSEE
GGVDLPNRKTSALPNGIVSTGSTVTQLISRGTDSGYESALKPGKMDHLSSSAPGSPPDLL
ESVPKSSISALPVNPHPVPARVPADLPSVSVTKQLQMVPRGSQLYSAQQADMFYQDPRGA
APSFEPAPYQQGVYYPTQSMSRFVRPPPSAAEAGAPYLEHYGPYLPERVVSPQYPQPQGY
PPLAQPMYPPHYDGRRVYPPVQPYQREDVVRGSPVPIDIPQAAVPLYVPEARDRYQQTEP
YCPVPPHLGQIRPSCHRPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPHPFHSE
EYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARSVEMANVDSKAMR
EQRLDMQRRAAEAGDDDLIPFGDRPTVSRFGAISRTSKAMYQNSGPMQAMAVPGAATKSI
ISDYSPYETHGGWGGSPYSPHQNIPSQGRFNDRERLSMSDVAAHGKQLPSAEREQQLRME
LQQVDHQISQQTQMRGLEAVSNRLLLQREATTLAGQPQPPPPPPKWPGMISSEQLSLELH
QVEREIGKRTRELSMESQSSLDMKNKLGTTKQTENGQLEPQNKVPAEDLTLTFSSDVPNG
SALTQENIGLLSNNMASLSLAEDPEGGGEGHDSQRGGVTPTSAP
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctctcctgcccgatttgcacacagact
ttcgacgaaaccatccgcaagcccatcagcctgggctgcggccacactgtctgcaagatg
tgcctcaacaagctccaccgcaaggcatgtccctttgaccagaccactatcaacacagac
attgagctccttcctgtcaactcagccttgctgcagcttgtgggtgctcaggttcctgag
cagcagccaattactttatgcagtggagctgaagataccaagcattatgaggagggcaag
aaatgtgtggaagaattggcattgtacctcaaaccactcagcagtgcaagaggtgtgggc
cttaacagcacgacccagagcgtgctgagccggcccatgcagaggaagctggtgacattg
gtgcactgccagctggtggaggaggaagggcgcatcagagccatgcgggcagcgcgctcc
ctgggtgaaagaacggtcacagagctcatcctgcagcaccagaaccctcagcagctctcc
tccaacctctgggctgcagtgagagccagaggctgccagttcctggggccagccatgcaa
gaggaggctctaaagctggttctgctggctttggaagatggatctgctctgtcacggaag
gtcttggttctctttgtggtgcagagactggagccacgattccctcaggcttccaagact
agcattgggcacgttgtccagctcctttacagagcctcctgcttcaaggtgaccaagcga
gacgaggactcctccctgatgcagctgaaggaggagttccggacgtacgaagctctgaga
agggagcacgactcgcagatcgtccagattgccatggaggcgggtttgcgcatcgcgcca
gaccagtggtcctcgctcctctatggagaccagtcccacaaatcccacatgcagagtatc
attgacaagttgcagaccccagcctcatttgcacagagtgttcaggaattaactattgct
cttcagaggactggagatccagctaacttgaatcgtctcagacctcacctagagctccta
gcaaatattgatcccagtccagatgctccacctccaacatgggaacaactggaaaatgga
ttagttgctgtgaggactgtggttcacggcttagttgattatatccagaatcacagcaaa
aaaggaacagatcaacaacagccccctcagcacagcaagtacaagacatacatgtgccgg
gacatgaagcagagaggaggatgtcccaggggagccagctgcacctttgcacactcacag
gaggagctggaaaaattccgtaaaatgaacaagcgtctcgttccccgaagaccccttagt
gcctccctgggccagctgaatgaggtgggcctgccttcaggagctatcctctcagaggaa
gggggagtggacttgcccaataggaaaacttctgctctgccaaatggaattgtgtcaaca
ggcagcacagtgacacaactgatttctcgagggactgactctggttatgaaagtgccctg
aagccggggaagatggaccatctgagcagcagtgcccctggatcccctcctgacttgctg
gaatctgtccccaagagctctatttctgccttgccagtgaaccctcatcctgtgcctgct
cgggtgccagcagatctgccctcagtgtctgtcaccaagcagttgcagatggtaccacga
gggtctcagttgtacagtgcacagcaagcagatatgttttatcaagaccccagaggggct
gccccatcgtttgagccagcaccctaccagcaaggagtgtactatcccactcagtccatg
tctcgctttgtgcgcccccctccgtcggcagccgaggcgggcgcgccgtacctggagcac
tacgggccgtacctgccggagcgcgtggtgagcccgcagtacccgcagccgcagggctac
ccgccgctggcgcagcccatgtacccgccgcactacgacggccgccgcgtctacccgccc
gtgcagccctaccagcgcgaggacgtggtgcgcggcagccccgtgcccatcgacatcccg
caggccgccgtgcccctctacgtgcccgaggccagggaccgataccagcaaacggagcct
tactgccccgtgcctccacatctcgggcagatccgaccttcctgccacaggcctcatccc
agcctggatgaacttcacagacgaaggaaagagatcatggcccagctggaagagaggaag
gtgatatctccacctccttttgcaccatcaccaaccttgcctcatccttttcactcagag
gagtacttggatgaagacctgaaggtagctgggaaatacaaaggaaatgactacagccag
tactccccgtggtcctgtgacaccatcggctcctacattggaaccaaagatgcaaaaccc
aaagatgttgtggcagcaaggagtgtggagatggcgaatgtggacagcaaagccatgcgt
gagcagcggctggacatgcagcggcgcgcggccgaggcgggggacgatgacctcattccc
ttcggagaccgcccaaccgtgtcaagatttggggccatctcccgtacttccaaagccatg
taccagaactctgggcccatgcaggccatggcagttccgggagctgccaccaaatccatc
atttcagactacagtccttatgaaactcacggtggctggggaggctctccatattctcct
catcaaaatataccttctcagggacgtttcaatgacagggagaggctgtccatgtcagat
gtggctgctcacgggaagcagttgccctcagctgaacgggagcagcagctgcgcatggag
ctgcagcaagtcgaccatcagatcagccagcagacccaaatgagggggctggaggctgtt
agtaacaggctgctgttgcagagagaggcgactaccctggcaggccagccacagccccca
cccccacctcccaagtggcctgggatgatctcaagtgagcagctgagcttggagctacac
caggtggaaagggaaattgggaagagaacccgtgagctgagcatggagagccaatcttca
ctggatatgaaaaacaagctgggcaccactaaacagacagaaaatggacaattagaacca
caaaacaaggttccagctgaggaccttacactgacattcagcagtgatgttccgaatgga
tcagctttgacccaagagaacattgggctcctgtcaaacaatatggcatctctgagcctg
gcagaggaccccgagggaggaggagagggccatgactcccagcgagggggagtgacaccc
acatctgctccatga
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