Zonotrichia leucophrys gambelii (white-crowned sparrow): 135450910
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Entry
135450910 CDS
T09958
Symbol
NDC1
Name
(RefSeq) nucleoporin NDC1
KO
K14315
nucleoporin NDC1
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135450910 (NDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zle03019
]
135450910 (NDC1)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
135450910 (NDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
GP41
Motif
Other DBs
NCBI-GeneID:
135450910
NCBI-ProteinID:
XP_064575631
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All DBs
Position
8:complement(25838675..25853024)
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AA seq
672 aa
AA seq
DB search
MEGAAGGQRALLRQVLGWRVAAAVTWSVLLLPLCTAAFIVLSGLDPFHPVRWISKSFNDL
YTSYVIFCIFLMSVVIIVISIFNVEFYAVVPSIPCSRLALIGKIIHPQQVIHSFVHAIMG
MLVAWCATVMTKGRFQFLAVSCTPSESLEDAVPQMCLNEYHLFFLLSGAFLGYSYSLFFL
INNMNYLPFPIIQQYKYLRFRRSLPLLIKHSCVESLYFVRNFCVTYYFFGYIPKVWICTT
MGLHTDSKLHPLDTLSGLLDLSLFYHTWLSGVFLLMTWYIAWLLFKIYATESHHFPIQPT
FAQETDQCLPKILNSNPPLLIKFLALQDLMLLSQYSPVRRQEVFSLSQPGGHPHNWTAIS
RECLSLLSDLTQRLIAQQEAAAANGRAKPPVGELKVPPQTPGAAGIEDTSFQSQRSNIVL
RASMSPLVKPSLMPVKMSPGSDVGSPFSSPALSYKMGAVDVKSPWHGTVQSPHVTRRGPK
LWTSVSDQQMNGSHHEPSPVLSAARTGSEAVQPKFIYTWLQNKQEQIKNFLSKRALIMYF
FSKHPEASIQAVFCDAQMHIWALEGLSHLVAASFTEDQFGVVQTTLPAILNTLLTLQEVV
DRHFKLPHVSSKPPRISGSLVDTSYKTLRFALRASLKTALYRITTVFGEHLNAVQVSTEH
KKRLQQFLDYKE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggagggggcggcgggcgggcagcgggcgctgctccggcaggttctgggctggcgagtg
gccgccgccgtgacctggtccgtgctgctgctgcccctctgcaccgcggccttcatcgtg
ctcagcggcctcgacccgttccacccggtgcgctggatctccaagtctttcaatgatttg
tatacttcttatgtcatcttttgtatcttcctgatgtctgtggtgataatagtaataagc
atcttcaacgttgaattttatgcagtggtgccatcaataccatgctctcgattagcactg
ataggaaaaattattcaccctcagcaagtgatccattcctttgttcatgctatcatggga
atgctggttgcttggtgtgctacagtcatgacaaaagggaggttccagtttcttgctgtg
tcctgcacaccttcagaaagcctagaagatgctgttcctcagatgtgcctaaatgagtat
cacctcttctttctgctttctggagctttcttgggatacagctacagccttttctttctt
attaacaacatgaattatttgccatttccaatcatacagcaatacaagtatttacgtttc
agaagatctttgcctctcctgataaaacacagttgtgtggaatcactctattttgttaga
aacttctgtgtcacatattacttttttggttacatcccaaaggtttggatatgtaccacg
atgggccttcatacagacagtaaattacatcctcttgacactctgagtggcttattggat
ctctccttgttttaccatacctggctgagtggtgtgttcctcctgatgacctggtacatt
gcttggctgctcttcaaaatctatgccacagagagtcatcattttcccattcaaccaacg
tttgctcaggagacagaccagtgcctgcctaaaattctgaacagcaatcctcccctcctt
ataaagtttttagccttacaggacttgatgttactttcccagtattctcctgttcgacga
caggaagtctttagcctcagtcagccaggtgggcacccacacaactggactgcaatatcc
cgggagtgcctgagtctcctcagtgacctgacccagaggctgattgcacagcaggaagca
gcagcagcaaatgggagagcaaagccaccagtgggagagctgaaagtacctccacagact
ccaggagctgctgggatagaagatacatcattccagtcacagaggtccaacattgttctc
agagcctccatgtctcccctggttaagccatccctgatgcctgtgaagatgtctcctggc
tctgatgttggttcacctttcagctctcctgctttaagttacaagatgggagctgtggat
gtaaaatctccttggcatggaacagttcaaagtccccatgtcacgaggaggggaccaaag
ctgtggacgtcggtttcagatcagcaaatgaatggttcccaccatgaaccctcccctgtg
ctctctgctgcaagaactgggagtgaggcagtgcagccaaaatttatttacacatggctt
cagaacaagcaagaacagataaaaaacttcttgtccaaacgggcgttgataatgtatttc
ttcagcaagcacccagaagcctccatccaggctgtcttctgtgatgcccaaatgcacatc
tgggctttggaaggtctgtctcacttggtagcagcctccttcactgaagaccagtttgga
gttgtccaaactacactgccagctatcctgaacacgctactgactcttcaggaggtcgta
gacagacatttcaaactgccacatgtttctagcaaacctccccggatttcagggagcctg
gtggacacatcctacaaaacactaagatttgcacttagagcatctctgaaaacagctctc
tacaggataactactgtctttggagaacacttgaatgctgtacaagtgtctacagaacat
aagaaaagacttcagcaattcctggactacaaagaataa
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