Zonotrichia leucophrys gambelii (white-crowned sparrow): 135451288
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Entry
135451288 CDS
T09958
Symbol
TNR
Name
(RefSeq) tenascin-R
KO
K06252
tenascin
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04510
Focal adhesion
zle04512
ECM-receptor interaction
zle04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135451288 (TNR)
04518 Integrin signaling
135451288 (TNR)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135451288 (TNR)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
zle00536
]
135451288 (TNR)
Glycosaminoglycan binding proteins [BR:
zle00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135451288 (TNR)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
FN3_DSCAM-DSCAML_C
EGF_Teneurin
EGF_Tenascin
Fn3_PBP1
Fn3_Dep-1_3rd
Pur_ac_phosph_N
Fn3_VIN3
Fn3_Dep-1_2nd
Fn3_ROS1
FN3_Tor_3rd
EGF_2
Lzipper-MIP1
TSC22
Motif
Other DBs
NCBI-GeneID:
135451288
NCBI-ProteinID:
XP_064576418
LinkDB
All DBs
Position
8:4518278..4598949
Genome browser
AA seq
1357 aa
AA seq
DB search
MGTDGENPILRSVVISFNLLLLGAVLKPFECHLEVMTEPAQRTAVDEAAGLTNCSPPTKE
QPMVFHHIYNINIPLDSCCSSMFKSSGEEVSSEDDRLAEYTEQTSDSESQVTFTHRINMP
KQACKCSTSLPSLQELLSRIEMLEREVSILRDQCTSNCCQENAATGQLDYIPQCSGHGNF
SLESCSCVCMEGWAGSNCSEPLCPGGCSSRGVCLEGQCICDSDYGGEDCSQPRCPAGCGS
RGLCVDGECVCEEGFTGDDCSELRCPRDCSGRGRCVNGTCECHEGFAGLDCGRQRCPAGC
GGRGLCRDGLCVCETGYGGHDCSEVSPPENLRVTGISDSSIELAWDSAGAATEYVVSYQP
AVPGGTQLQQRVPGDWSSITITDLEPGVAYNVSIYAVISDVFSSPVTSRVMTNLATPQGL
KFKTITETTAEVQWEPFSFPLDGWEISFIPKNNEGGVIAQLPSTVTTFNQTGLKPGEEYT
VTVVALKEQARSPPTSDSVSTLIDGPTQILVRDVSDTVAFVEWSPPRAKVDAILLKYGLA
DGEGGRTTFRLQPPLSQYSLQALRPGARYHLAVSALRGANESRPAFAQFTTEIDAPKNLR
VGSRSPASLELTWDNSEAEAHSYRVVYSTLAGEHYHELLVPRHAGPTTRATLADLVPGTE
YGIGISAVMDSQQSVPATMNARTELDSPRDLLVTASTETSISLAWTKATGPIDHYRVTFT
PASGMASEVTVSRDESQLTLSELEPGTEYTISIIAERGRQQSLEATVDAFTGVRPISQLH
FSQLTSSSVNVTWSDPSPPADRLILTYSRRDEEEEEAQQVTLDGTRRHTSLTGLQPATEY
LVSLVAVHGTISSEPVVGSITTGIDAPRDLRVGNVTQESMIVYWSAPIAAFDHYRISYRA
AEGRTDSMAISRDATEYTLQDLQPATKYEIELKSMRGREESELASITAYTAMDVPLGVTA
TNITPTEALLQWNPPLSEVESYVLILTRRAVAGETILVDGDNQEYQLTNLLPSTTYTVSM
YATSGPLTSQTISTNFTTLLDPPTNLTASEVTRRSALLSWAPPMGEIENYIMTYRSTDGS
RKELIVDAEDTWIRLEGLSETTEYTVHLQAAQNAVRSGLVSTTFTTGGRVFANPQDCAQH
LMNGDTLSGVYTISINGDLSQRVPVYCDMTTDGGGWIVFQRRQNGLTDFFRKWADYRVGF
GNLEDEFWLGLDNIHKITSQGRYELRIDMRDGQEAAYAYYDKFSIGDSRSLYKLRIGDYN
GTSGDSLTYHQGRPFSTKDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESRHSQGI
NWYHWKGHEFSIPFVEMKMRPYNHRNISGRKRRSLQL
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggggactgatggtgaaaacccgatcctgaggagcgtggtcatcagcttcaacttgctc
ctgctgggcgctgtcctcaagccgtttgagtgccacctggaggtgatgacagagccggcc
cagaggacagcggtggatgaggcagctggcctcaccaactgcagcccacccaccaaagag
cagcccatggtcttccaccacatctacaacatcaacatccccctggacagctgctgctcc
tccatgttcaagtcttcgggcgaggaggtgagttcagaagacgaccggctggcagagtac
acggagcagacctccgacagcgagagccaggtcaccttcacccacaggataaacatgccc
aagcaggcctgcaagtgctccacctccctcccatccctgcaggagctgctgagcaggatt
gagatgctggagagggaggtctccatcctccgggaccaatgcacctccaattgctgccaa
gaaaatgcagccacagggcagctggattacatcccgcagtgcagcggccacgggaatttc
agcctggagtcgtgcagctgcgtgtgcatggagggctgggcgggcagcaactgctcggag
ccgctgtgcccggggggctgctccagccgcggcgtgtgcctggagggccagtgcatctgc
gacagcgactacggcggcgaggactgctcccagccgcgctgccccgccggctgcggctcc
cgcgggctctgcgtggacggcgagtgcgtgtgcgaggagggattcaccggggacgactgc
tcggagctgcgctgcccccgcgactgctcgggccggggccgctgcgtgaacggcacctgc
gagtgccacgagggcttcgccgggctcgactgcggccggcagcgctgccccgccggctgc
ggcggccgcgggctctgccgcgacgggctctgcgtctgcgagacaggctacggcggccac
gactgctccgaagtgtctccccctgagaacctgcgggtgacggggatcagcgacagctcc
atcgagctggcctgggacagcgccggggcagccactgagtacgtggtgtcctaccagcct
gccgtgccagggggcacccagctccagcagagggtgcctggggactggagcagcatcacc
atcacggacctggagccaggcgttgcctacaatgtcagcatctatgcagtcatcagtgac
gtcttcagcagccctgttacctccagggtgatgaccaacctcgccacaccacaggggctg
aagttcaagaccatcacagagacaacagcagaggtgcagtgggagcccttctccttcccc
ttggacggctgggagatcagcttcatccccaagaacaacgagggtggtgtgattgcccag
ctccccagcaccgtcaccaccttcaaccagacggggctgaagccgggggaggagtacact
gtcaccgtggtggccctgaaggaacaagccagaagccctcccacctctgacagcgtctca
accctcattgacggcccgacgcagatcctggtgcgggacgtctcggacacggtggccttc
gtggagtggagcccgcctcgcgccaaggtggacgccatcctgctgaagtacgggctggcg
gacggggagggcggcaggaccacgttccgcctgcagccccccctcagccagtactccctg
caggccctgcgccccggcgcccgctaccacctggccgtcagcgccctgcgcggcgccaac
gagagccgccccgccttcgcgcagttcaccacagagattgacgcccccaagaacctgcgg
gtgggctcgcggagccccgccagcctcgagctcacctgggacaacagcgaggccgaggca
cacagctacagggtggtgtacagcaccctggccggggagcactaccacgagctcctggtg
ccgcgccacgccggccccaccacccgcgccaccctcgcagatctggtgccgggaacagag
tatggcattgggatttcagccgtgatggacagccagcagagcgtgccagcgaccatgaat
gccaggaccgagctcgacagcccacgggacctgctggtgacagcctccactgagacatcc
atctcactggcttggaccaaagccacgggtcccatcgaccattaccgtgtcaccttcacc
cctgcctcgggaatggcctctgaagtgacagtgtccagggacgagtcacagctcacactc
tcagagctggagcccggcacagagtacaccatctctatcatcgctgagagggggcggcag
cagagcctggaggccactgtggatgccttcacaggtgttcggcccatctcccagctgcac
ttctcccagctgacatcctccagtgtgaatgtcacatggagtgacccctccccaccagca
gaccgcctcatcctcacctacagccgccgggacgaggaggaggaggaggcccagcaggtc
acactggatggcacccgcaggcacaccagcctgacaggcttgcagccagccacagagtac
ctggtgtccctggtggccgtgcatggcaccatcagctctgagcctgtcgtgggctccatc
actacagggattgatgcaccaagggacctcagggtgggcaatgtcacccaggagtccatg
attgtctactggagtgctcccatcgctgcctttgaccactacaggatatcctaccgtgct
gctgaaggaaggacagacagcatggccatctccagggatgccactgagtacaccctgcag
gacctgcagcctgccacaaagtatgagattgagctgaagagcatgcgaggccgggaggag
agtgagctggcctccatcactgcatacacagccatggatgtccccctaggggtcacagcc
accaacatcactcccacagaggcgctgctgcagtggaacccgccgctgtcggaggtggaa
agctacgtgcttatcctcacccgccgtgcagttgcaggagaaacaattcttgtggatgga
gacaaccaggagtaccagctgaccaacctgctgcccagtaccacctacacagtgtctatg
tatgccaccagtgggcctctcactagccagaccatcagcaccaacttcaccactcttttg
gatcctccaaccaatctgacagccagtgaagtcacgcgacggagcgccctgctgtcctgg
gctcctcccatgggagagattgagaattacatcatgacctacagatccaccgatggcagc
aggaaggagctgattgtggatgcagaggacacgtggatccgcctggaggggctttctgag
accacggagtacacggtgcacctgcaggctgcccagaacgccgtgcgcagcggcctcgtc
tccaccaccttcaccacaggaggacgtgtgtttgctaaccctcaggactgtgcccagcac
ctgatgaatggagacacgctgagcggggtctacaccatctccatcaacggggacctcagc
cagcgggtgcccgtgtactgtgacatgaccactgatggagggggctggattgtgttccag
cggcggcagaatgggctgaccgatttcttccggaaatgggcagattaccgcgttggcttt
ggaaacctggaggatgagttttggctgggcttggacaacatccacaagatcacgtcccaa
gggcgctacgagctgcggatagacatgagggatggccaggaggcagcatatgcctactat
gacaagttctccattggtgactccaggagcctctacaaactgcgcattggggactacaat
ggcacttcaggagactccctcacctatcaccagggacgccccttctccaccaaggatagg
gacaatgatgttgctgtgaccaactgtgccatgtcctacaaaggggcctggtggtataag
aactgccaccgcaccaacctcaacggcaagtacggagagtcccggcacagtcagggcatt
aactggtatcattggaaaggccacgagttctccatcccctttgtggaaatgaagatgcga
ccttacaaccaccgtaacatctctgggaggaagagacggtccctacagctctga
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