Zonotrichia leucophrys gambelii (white-crowned sparrow): 135451432
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Entry
135451432 CDS
T09958
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04510
Focal adhesion
zle04512
ECM-receptor interaction
zle04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135451432 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135451432 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
135451432 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zle04147
]
135451432 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
zle00536
]
135451432 (COL4A4)
Exosome [BR:
zle04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
135451432 (COL4A4)
Glycosaminoglycan binding proteins [BR:
zle00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135451432 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
135451432
NCBI-ProteinID:
XP_064576665
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All DBs
Position
9:complement(9761363..9829740)
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AA seq
1681 aa
AA seq
DB search
MALTKDSFERIKWLITAAWWLLIIFSTQGIDGGGYAYIDPCGGQDCSVCRCFPEKGSRGQ
PGELGAQGPIGSLGSTGPAGLPGEKGQRGENGKPGPAGEKGDKGPTGVPGFPGLDGVPGL
PGREGPRGKHGLDGCNGSRGDPGFPGESGYMGPRGPYGIPGQKGEKGNSVYILHFGKGLP
GERGDPGPPGLPGPRGSRGTTGPSGYPGHPGLPGVPGYPGLPGEQGNPGIGVDGQKGEPG
DIGLPGPPGSPLLVGPPGAQLFKGQKGQKGLPGVTGYRGPRGPKGILGRGEKGEKGLPGF
PGLRGHPGSYGPAGSPGMKGETGFAGFPGQPGYPGIQGDPGEKGPPGPPGAVGTPLLPIK
GPRGDPGFPGPVGEMGSVGPIGPSGLLGRPGYDGTSLPGLPGVSGAPGPQGFQGDPGLPG
TGELIPGRPGFPGPPGLPGQPGRQGLPGLPSVICTDRGIPGEPGPKGQIGLPGRKGAKGE
KGSQGLCSCSAGPPGARGVQGPAGTAGRKGQMGSPGRPGEKGDPGLSGAVGSPGLPGTPG
SAGQPGEKGEKGDPGRVRIKGLKGERGPSGLPGFPGQRGLDGRDGELGLPGEKGAEGDSG
VAIPGDKGFPGLPGPPGVKGQMGLPGLGLPGSPGARGSPGDSGDMGNVGPPGPKGQKGET
VCITSPYPGNPGPPGFKGVQGQKGLKGLPGHPGPNGFDGQKGNRGRPGAGIPGPEGFRGT
AGDPGDEGERGSTIDGKNGLPGPPGPDGQKGLPGDTTYGPPGIPGNRGLPGPPGAQGARG
NPGTPGLQGQPGTPGFPGAKGFRGPEGDVGAPGCPGFPGSPCVPGLPGPPGLRGVMGLPG
PQGLPGFKGQRGDRGLAGPPGIKGLKGSLGSQGLPGPPGSRGPPGLPGNTGPVGFPGERG
SKGIQGPQGFPGLPGIQGPMGIFGVKGEEGKMGLPGPSGECGDMGMKGERGPPGDSGCVN
LRLEKGQRGDPGFPGEHGLRGDTGEKGNTGFRGTRGFPGKNGVPGLPGDQGDTGVMGFPG
SQGLPGPKGLQGMTGFQGEPGDQGDVGLPGNPGYPGLTGSKGCKGKRGDPTPLLGTHGQK
GPLGDPGLPGLRGFPGEKGLPGIQGQPGRPGSKGDPGYPGPPGLPGATGPQGLPGEPGER
GKPGILGPPGLQGLPGSQGRKGLPGLPGLDGLDGLKGQKGSAGAPGQSETGPPGYSGEIG
PKGDRGDPGWPGISIPGPPGERGFPGFPGRRGPVGPTGPMGRSPDSASPGPPGDQGLPGL
DGIRGDPGNPGPPGETIFVRGDPGDSGVRGAPGNPGPRGQQGARGPPGSQGRAGLKGPMG
VHGPQGPPGALGQQGDQGFPGRPGPRGPTGFIGDPGEPGKVDDSCPTIPGPPGEAGQRGE
DGSAGLPGPIGHPGPQGIKGEEGSYGLPGQDGLPGAPGPPGDQGSRGEQGYAGPQGPPGP
TGVPGQPGPQIRSASGFLLVLHSQSDREPLCPQGMPKLWTGYSLLYLEGQEKAHNQDLGL
AGSCLPVFSTMPFAYCNINQVCYYASRNDKSYWLASAAPLPTAPLSEEEIQPYISRCAVC
EAPAQAVALHSQDQAIPPCPPNWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSA
PFIECQGQRGTCQFFANEYSFWLTTVMPELQFASAPLSGTLKEGQEQRKKISRCQVCLKH
G
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggcattaacaaaggattcatttgaacggattaagtggcttatcacagctgcctggtgg
ctgctgataattttttcaactcaaggaattgatgggggaggatatgcatatattgatcca
tgtgggggacaggattgttcagtttgtcggtgctttccagaaaaaggatcaaggggtcag
cctggtgagctgggagctcaaggtccaattgggtccttgggatctacaggaccagctggt
ctgccaggggagaaaggacagagaggtgagaatgggaagcctgggccagctggagaaaaa
ggtgataagggcccaaccggagttccaggatttcctggtttagatggtgttcctggcctc
ccaggaagggaaggacccagagggaagcatggtttggacggctgcaatggctcgagggga
gacccaggattcccaggagaaagcggttatatgggaccaagaggtccttatggaattcca
gggcaaaaaggagaaaaaggaaattcagtgtatattttacattttggaaaaggacttccg
ggagagagaggtgatcctggaccccctggcctgcctggacctaggggctcaagaggtaca
acgggcccatctggatacccaggccatccaggcttgcctggtgttccaggttaccctggt
ttgccaggtgaacagggaaatccaggaattggagtggatggacaaaagggggagccgggt
gacattggactgcctgggccccctgggtcaccactgttagttggacctcctggagctcaa
ctgttcaaaggacaaaagggccaaaaaggattacctggggtaacaggatacagagggcca
cgtggacccaaaggcatacttgggagaggagaaaaaggtgaaaaaggccttcctggattc
cctggattgcggggtcatcctggttcttatggacctgcaggttctcctggaatgaagggt
gaaacaggatttgctggttttcctggacaacctggctatccaggcattcagggggatcca
ggagaaaaagggcccccaggtcctcctggagctgttggaactccactgcttcctataaaa
ggtccacgaggagatcctggatttccaggtcctgttggtgaaatggggtcagttggacca
attggtccttcaggccttctaggaagaccaggatatgatggaacaagtcttcctggcctg
ccaggagtaagtggggcaccaggacctcaaggatttcaaggggaccctggtttgcctgga
acaggtgaattaatcccaggaagaccgggatttcctggaccacccggcctgccagggcag
ccaggaagacaaggcttacctggactacccagtgtaatctgtactgacagagggatccct
ggagaacctggaccaaaaggtcagattggccttccaggaagaaaaggggcaaaaggagag
aagggaagtcaaggcctctgctcatgtagtgctggtcctcctggtgcccgtggtgtgcaa
ggacctgcaggtactgcaggaaggaaaggacaaatgggatcccctggaagacccggagaa
aagggcgaccccggcttatctggtgcagtgggatcaccagggctccctgggactcctggt
tctgctggacagcctggggaaaaaggagagaagggtgatccaggaagagttagaataaaa
ggattgaagggtgaaagaggacctagtgggcttccaggatttccaggccaaagaggtctt
gatggcagagatggagaactaggattgccaggggaaaaaggagctgagggcgattctgga
gtagcaattccgggtgataaaggattccctgggctcccaggacctcctggggtaaaaggc
cagatgggattgcctggtttggggcttcctgggtctccaggagccagaggtagccctgga
gactctggagatatgggtaatgttgggccacctggtccaaaaggccagaaaggtgaaact
gtctgcattacatcaccatatcctggaaatccaggtcccccaggttttaaaggtgttcaa
ggacaaaaaggtttaaaaggactccctgggcatcctggaccaaatggctttgatgggcaa
aaaggcaatcgaggaaggccaggagcaggaatccctgggccagaaggctttcgaggcaca
gctggtgatcctggtgatgaaggtgaaagaggatctacaattgatggcaaaaatggcctt
ccaggtccacctggcccagatggtcagaaaggtcttccaggtgacaccacatacggccct
ccaggaataccaggcaacaggggactgccaggaccccctggtgcacagggagcaaggggt
aatccaggcactcctggacttcaaggacaacccggtaccccaggatttccaggtgccaaa
ggctttagaggcccagaaggtgatgtaggagcaccaggctgcccgggctttcctggctca
ccatgtgtcccaggcttaccagggccacctggactcagaggtgtcatgggcctgccagga
cctcaaggtttaccaggctttaaaggtcagaggggagacaggggcctggctgggccccct
ggaatcaaaggcctcaaaggctctctgggctcacaaggtctcccaggtcctcctggctca
cgaggtcccccaggacttccaggaaatacaggacctgttggcttcccaggagaaagagga
agcaaaggcattcaaggacctcagggattcccaggactcccaggaatacaaggcccaatg
ggaatctttggtgtaaaaggtgaagaaggaaaaatgggtctacctgggcctagtggagaa
tgtggagatatgggaatgaaaggtgagagggggcctccaggagacagcggctgcgttaac
ctccgcctggagaagggccagaggggggacccagggtttcctggggagcacggactgaga
ggtgacacgggtgaaaaaggcaatactggtttcagaggcacacgaggatttccaggaaag
aatggtgttccaggactaccaggtgaccaaggtgacactggagtgatggggtttccagga
tcacaaggtttgcctggaccaaagggccttcaaggaatgacaggttttcaaggagaacca
ggtgaccagggtgatgttggcttaccaggaaaccctgggtatccaggactgactggctcc
aaaggatgtaaaggcaaaagaggtgacccaactcctctgcttggtacacacggtcagaaa
gggcctctgggagatccaggattgccaggacttcgtggatttccaggggagaagggttta
ccaggtatccaaggacagcctggaagaccaggatctaagggtgacccaggatatccaggg
ccacctggattaccaggagctacaggtcctcaagggttgccaggagaacctggagaaaga
gggaaacctggaattttgggacctccaggattgcaagggttacctggatcccaaggcaga
aaaggtcttcctggactgcctggactggatggcttggatggactaaaaggtcaaaaaggt
tctgcaggagctccaggtcagagtgagactgggcccccaggatactcaggagaaattgga
ccaaaaggagacagaggtgatcctggatggcctggtatttctattccagggccccctgga
gaaaggggattcccaggatttccaggtagaagaggacctgttggacccactggacctatg
ggaagatctcctgatagtgcctcccctggtcctccgggtgatcaaggattacctggttta
gatggcatcagaggtgatcctgggaatcctggtcctcccggagagacgatctttgtgcga
ggagatccaggtgatagtggtgttcgaggggcaccaggtaatcctgggccacgaggacag
cagggagccagaggccctccagggagccaaggaagagcaggcctcaagggtcctatgggg
gtccatggcccacagggtccacctggtgctttaggacaacaaggagaccaaggttttcca
ggaagacctggtcccagaggtcccacaggtttcataggtgaccctggtgagccagggaaa
gtggatgattcatgccctaccatcccagggcctcctggggaagcagggcaaagaggagag
gatggctctgcaggattaccagggccaataggccaccctggaccccaaggcataaaaggt
gaagaaggatcatatggcctgccaggtcaagatgggttacctggggcacctggaccacca
ggtgaccaagggagccgaggagagcaaggatatgctgggccacaaggtccacctggcccg
actggtgtcccaggacaaccaggcccccagattagatctgcaagtggattcttgctcgtc
cttcacagtcagtcagacagagaaccactctgcccacaggggatgccaaagttatggact
ggctatagtctgctgtacctggagggacaagagaaagcccataatcaagatcttggtctg
gcagggtcctgcctgcctgtgtttagcaccatgccctttgcctactgcaacatcaaccag
gtgtgttactatgccagccgcaatgacaagtcctactggctggccagcgcggccccgctg
cccacggcgccgctgtccgaggaggagatccagccctacatcagcaggtgtgctgtgtgc
gaggcccctgcgcaggccgtggcgctgcacagccaggaccaggccattcccccctgccca
cccaactggaggagcctttggatagggtactcgtttctgatgcacactggatctggtgac
cagggtggtggacagtcccttatgtcaccgggaagctgcctggaagacttcagatcagca
ccattcatcgagtgccagggccagcggggaacgtgtcagttcttcgctaatgaatacagt
ttctggctcaccaccgtgatgcctgagctgcagtttgcatcagcccccctgtcagggact
cttaaagaaggacaagagcagaggaaaaaaatcagtagatgccaggtatgcctgaagcat
ggctaa
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