Zonotrichia leucophrys gambelii (white-crowned sparrow): 135451432
Help
Entry
135451432 CDS
T09958
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04382
Cornified envelope formation
zle04510
Focal adhesion
zle04512
ECM-receptor interaction
zle04518
Integrin signaling
zle04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135451432 (COL4A4)
04518 Integrin signaling
135451432 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135451432 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
135451432 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
135451432 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zle04147
]
135451432 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
zle00536
]
135451432 (COL4A4)
Exosome [BR:
zle04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
135451432 (COL4A4)
Glycosaminoglycan binding proteins [BR:
zle00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135451432 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
135451432
NCBI-ProteinID:
XP_064576665
LinkDB
All DBs
Position
9:complement(9761363..9829740)
Genome browser
AA seq
1681 aa
AA seq
DB search
MALTKDSFERIKWLITAAWWLLIIFSTQGIDGGGYAYIDPCGGQDCSVCRCFPEKGSRGQ
PGELGAQGPIGSLGSTGPAGLPGEKGQRGENGKPGPAGEKGDKGPTGVPGFPGLDGVPGL
PGREGPRGKHGLDGCNGSRGDPGFPGESGYMGPRGPYGIPGQKGEKGNSVYILHFGKGLP
GERGDPGPPGLPGPRGSRGTTGPSGYPGHPGLPGVPGYPGLPGEQGNPGIGVDGQKGEPG
DIGLPGPPGSPLLVGPPGAQLFKGQKGQKGLPGVTGYRGPRGPKGILGRGEKGEKGLPGF
PGLRGHPGSYGPAGSPGMKGETGFAGFPGQPGYPGIQGDPGEKGPPGPPGAVGTPLLPIK
GPRGDPGFPGPVGEMGSVGPIGPSGLLGRPGYDGTSLPGLPGVSGAPGPQGFQGDPGLPG
TGELIPGRPGFPGPPGLPGQPGRQGLPGLPSVICTDRGIPGEPGPKGQIGLPGRKGAKGE
KGSQGLCSCSAGPPGARGVQGPAGTAGRKGQMGSPGRPGEKGDPGLSGAVGSPGLPGTPG
SAGQPGEKGEKGDPGRVRIKGLKGERGPSGLPGFPGQRGLDGRDGELGLPGEKGAEGDSG
VAIPGDKGFPGLPGPPGVKGQMGLPGLGLPGSPGARGSPGDSGDMGNVGPPGPKGQKGET
VCITSPYPGNPGPPGFKGVQGQKGLKGLPGHPGPNGFDGQKGNRGRPGAGIPGPEGFRGT
AGDPGDEGERGSTIDGKNGLPGPPGPDGQKGLPGDTTYGPPGIPGNRGLPGPPGAQGARG
NPGTPGLQGQPGTPGFPGAKGFRGPEGDVGAPGCPGFPGSPCVPGLPGPPGLRGVMGLPG
PQGLPGFKGQRGDRGLAGPPGIKGLKGSLGSQGLPGPPGSRGPPGLPGNTGPVGFPGERG
SKGIQGPQGFPGLPGIQGPMGIFGVKGEEGKMGLPGPSGECGDMGMKGERGPPGDSGCVN
LRLEKGQRGDPGFPGEHGLRGDTGEKGNTGFRGTRGFPGKNGVPGLPGDQGDTGVMGFPG
SQGLPGPKGLQGMTGFQGEPGDQGDVGLPGNPGYPGLTGSKGCKGKRGDPTPLLGTHGQK
GPLGDPGLPGLRGFPGEKGLPGIQGQPGRPGSKGDPGYPGPPGLPGATGPQGLPGEPGER
GKPGILGPPGLQGLPGSQGRKGLPGLPGLDGLDGLKGQKGSAGAPGQSETGPPGYSGEIG
PKGDRGDPGWPGISIPGPPGERGFPGFPGRRGPVGPTGPMGRSPDSASPGPPGDQGLPGL
DGIRGDPGNPGPPGETIFVRGDPGDSGVRGAPGNPGPRGQQGARGPPGSQGRAGLKGPMG
VHGPQGPPGALGQQGDQGFPGRPGPRGPTGFIGDPGEPGKVDDSCPTIPGPPGEAGQRGE
DGSAGLPGPIGHPGPQGIKGEEGSYGLPGQDGLPGAPGPPGDQGSRGEQGYAGPQGPPGP
TGVPGQPGPQIRSASGFLLVLHSQSDREPLCPQGMPKLWTGYSLLYLEGQEKAHNQDLGL
AGSCLPVFSTMPFAYCNINQVCYYASRNDKSYWLASAAPLPTAPLSEEEIQPYISRCAVC
EAPAQAVALHSQDQAIPPCPPNWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSA
PFIECQGQRGTCQFFANEYSFWLTTVMPELQFASAPLSGTLKEGQEQRKKISRCQVCLKH
G
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggcattaacaaaggattcatttgaacggattaagtggcttatcacagctgcctggtgg
ctgctgataattttttcaactcaaggaattgatgggggaggatatgcatatattgatcca
tgtgggggacaggattgttcagtttgtcggtgctttccagaaaaaggatcaaggggtcag
cctggtgagctgggagctcaaggtccaattgggtccttgggatctacaggaccagctggt
ctgccaggggagaaaggacagagaggtgagaatgggaagcctgggccagctggagaaaaa
ggtgataagggcccaaccggagttccaggatttcctggtttagatggtgttcctggcctc
ccaggaagggaaggacccagagggaagcatggtttggacggctgcaatggctcgagggga
gacccaggattcccaggagaaagcggttatatgggaccaagaggtccttatggaattcca
gggcaaaaaggagaaaaaggaaattcagtgtatattttacattttggaaaaggacttccg
ggagagagaggtgatcctggaccccctggcctgcctggacctaggggctcaagaggtaca
acgggcccatctggatacccaggccatccaggcttgcctggtgttccaggttaccctggt
ttgccaggtgaacagggaaatccaggaattggagtggatggacaaaagggggagccgggt
gacattggactgcctgggccccctgggtcaccactgttagttggacctcctggagctcaa
ctgttcaaaggacaaaagggccaaaaaggattacctggggtaacaggatacagagggcca
cgtggacccaaaggcatacttgggagaggagaaaaaggtgaaaaaggccttcctggattc
cctggattgcggggtcatcctggttcttatggacctgcaggttctcctggaatgaagggt
gaaacaggatttgctggttttcctggacaacctggctatccaggcattcagggggatcca
ggagaaaaagggcccccaggtcctcctggagctgttggaactccactgcttcctataaaa
ggtccacgaggagatcctggatttccaggtcctgttggtgaaatggggtcagttggacca
attggtccttcaggccttctaggaagaccaggatatgatggaacaagtcttcctggcctg
ccaggagtaagtggggcaccaggacctcaaggatttcaaggggaccctggtttgcctgga
acaggtgaattaatcccaggaagaccgggatttcctggaccacccggcctgccagggcag
ccaggaagacaaggcttacctggactacccagtgtaatctgtactgacagagggatccct
ggagaacctggaccaaaaggtcagattggccttccaggaagaaaaggggcaaaaggagag
aagggaagtcaaggcctctgctcatgtagtgctggtcctcctggtgcccgtggtgtgcaa
ggacctgcaggtactgcaggaaggaaaggacaaatgggatcccctggaagacccggagaa
aagggcgaccccggcttatctggtgcagtgggatcaccagggctccctgggactcctggt
tctgctggacagcctggggaaaaaggagagaagggtgatccaggaagagttagaataaaa
ggattgaagggtgaaagaggacctagtgggcttccaggatttccaggccaaagaggtctt
gatggcagagatggagaactaggattgccaggggaaaaaggagctgagggcgattctgga
gtagcaattccgggtgataaaggattccctgggctcccaggacctcctggggtaaaaggc
cagatgggattgcctggtttggggcttcctgggtctccaggagccagaggtagccctgga
gactctggagatatgggtaatgttgggccacctggtccaaaaggccagaaaggtgaaact
gtctgcattacatcaccatatcctggaaatccaggtcccccaggttttaaaggtgttcaa
ggacaaaaaggtttaaaaggactccctgggcatcctggaccaaatggctttgatgggcaa
aaaggcaatcgaggaaggccaggagcaggaatccctgggccagaaggctttcgaggcaca
gctggtgatcctggtgatgaaggtgaaagaggatctacaattgatggcaaaaatggcctt
ccaggtccacctggcccagatggtcagaaaggtcttccaggtgacaccacatacggccct
ccaggaataccaggcaacaggggactgccaggaccccctggtgcacagggagcaaggggt
aatccaggcactcctggacttcaaggacaacccggtaccccaggatttccaggtgccaaa
ggctttagaggcccagaaggtgatgtaggagcaccaggctgcccgggctttcctggctca
ccatgtgtcccaggcttaccagggccacctggactcagaggtgtcatgggcctgccagga
cctcaaggtttaccaggctttaaaggtcagaggggagacaggggcctggctgggccccct
ggaatcaaaggcctcaaaggctctctgggctcacaaggtctcccaggtcctcctggctca
cgaggtcccccaggacttccaggaaatacaggacctgttggcttcccaggagaaagagga
agcaaaggcattcaaggacctcagggattcccaggactcccaggaatacaaggcccaatg
ggaatctttggtgtaaaaggtgaagaaggaaaaatgggtctacctgggcctagtggagaa
tgtggagatatgggaatgaaaggtgagagggggcctccaggagacagcggctgcgttaac
ctccgcctggagaagggccagaggggggacccagggtttcctggggagcacggactgaga
ggtgacacgggtgaaaaaggcaatactggtttcagaggcacacgaggatttccaggaaag
aatggtgttccaggactaccaggtgaccaaggtgacactggagtgatggggtttccagga
tcacaaggtttgcctggaccaaagggccttcaaggaatgacaggttttcaaggagaacca
ggtgaccagggtgatgttggcttaccaggaaaccctgggtatccaggactgactggctcc
aaaggatgtaaaggcaaaagaggtgacccaactcctctgcttggtacacacggtcagaaa
gggcctctgggagatccaggattgccaggacttcgtggatttccaggggagaagggttta
ccaggtatccaaggacagcctggaagaccaggatctaagggtgacccaggatatccaggg
ccacctggattaccaggagctacaggtcctcaagggttgccaggagaacctggagaaaga
gggaaacctggaattttgggacctccaggattgcaagggttacctggatcccaaggcaga
aaaggtcttcctggactgcctggactggatggcttggatggactaaaaggtcaaaaaggt
tctgcaggagctccaggtcagagtgagactgggcccccaggatactcaggagaaattgga
ccaaaaggagacagaggtgatcctggatggcctggtatttctattccagggccccctgga
gaaaggggattcccaggatttccaggtagaagaggacctgttggacccactggacctatg
ggaagatctcctgatagtgcctcccctggtcctccgggtgatcaaggattacctggttta
gatggcatcagaggtgatcctgggaatcctggtcctcccggagagacgatctttgtgcga
ggagatccaggtgatagtggtgttcgaggggcaccaggtaatcctgggccacgaggacag
cagggagccagaggccctccagggagccaaggaagagcaggcctcaagggtcctatgggg
gtccatggcccacagggtccacctggtgctttaggacaacaaggagaccaaggttttcca
ggaagacctggtcccagaggtcccacaggtttcataggtgaccctggtgagccagggaaa
gtggatgattcatgccctaccatcccagggcctcctggggaagcagggcaaagaggagag
gatggctctgcaggattaccagggccaataggccaccctggaccccaaggcataaaaggt
gaagaaggatcatatggcctgccaggtcaagatgggttacctggggcacctggaccacca
ggtgaccaagggagccgaggagagcaaggatatgctgggccacaaggtccacctggcccg
actggtgtcccaggacaaccaggcccccagattagatctgcaagtggattcttgctcgtc
cttcacagtcagtcagacagagaaccactctgcccacaggggatgccaaagttatggact
ggctatagtctgctgtacctggagggacaagagaaagcccataatcaagatcttggtctg
gcagggtcctgcctgcctgtgtttagcaccatgccctttgcctactgcaacatcaaccag
gtgtgttactatgccagccgcaatgacaagtcctactggctggccagcgcggccccgctg
cccacggcgccgctgtccgaggaggagatccagccctacatcagcaggtgtgctgtgtgc
gaggcccctgcgcaggccgtggcgctgcacagccaggaccaggccattcccccctgccca
cccaactggaggagcctttggatagggtactcgtttctgatgcacactggatctggtgac
cagggtggtggacagtcccttatgtcaccgggaagctgcctggaagacttcagatcagca
ccattcatcgagtgccagggccagcggggaacgtgtcagttcttcgctaatgaatacagt
ttctggctcaccaccgtgatgcctgagctgcagtttgcatcagcccccctgtcagggact
cttaaagaaggacaagagcagaggaaaaaaatcagtagatgccaggtatgcctgaagcat
ggctaa
DBGET
integrated database retrieval system
