Zonotrichia leucophrys gambelii (white-crowned sparrow): 135451466
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Entry
135451466 CDS
T09958
Symbol
ATG4B
Name
(RefSeq) cysteine protease ATG4B
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04136
Autophagy - other
zle04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
135451466 (ATG4B)
04136 Autophagy - other
135451466 (ATG4B)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
zle01002
]
135451466 (ATG4B)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zle04131
]
135451466 (ATG4B)
03029 Mitochondrial biogenesis [BR:
zle03029
]
135451466 (ATG4B)
Peptidases and inhibitors [BR:
zle01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
135451466 (ATG4B)
Membrane trafficking [BR:
zle04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
135451466 (ATG4B)
Mitochondrial biogenesis [BR:
zle03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
135451466 (ATG4B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Motif
Other DBs
NCBI-GeneID:
135451466
NCBI-ProteinID:
XP_064576763
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All DBs
Position
9:4446894..4466007
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AA seq
393 aa
AA seq
DB search
MDAATLTYDTLRFEYEDFPETKEPVWILGRKYSVFTEKEEILLDVTSRLWFTYRKNFPAI
GGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWIKGKRQMDNYFNVLNAFIDKKDS
YYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLATFDTWSSLAVHIAMDNTVVMEEIRR
LCQSNVPCAGAAACPALESDVLYNGCPEDLGLRGRLPLWKPLVLLIPLRLGLTEINEAYI
ETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPGDSGCLPDESFH
CQHPPCRMSIAELDPSIAVGFFCNTEADFNDWCQQIKKLSLVRGALPMFELVERQPSHFS
NPDVLNLTPDSSDADRLERFFDSEDEDFEILSL
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggacgcagctacgcttacctacgacaccctcaggtttgagtatgaagacttccctgag
accaaagaacctgtttggatccttggcaggaaatacagtgtttttacagagaaggaagag
atcctgctggatgtgacctctaggctttggttcacctacagaaagaacttccctgctatt
ggaggaacaggtcccacctctgacacgggctggggctgcatgctgcgctgtggccagatg
atctttgctcaggccttggtctgcaggcatttgggaagagactggaggtggataaaaggg
aagaggcagatggataattacttcaacgttcttaatgccttcattgacaaaaaagacagc
tactactccattcaccagatagcccagatgggagtcggggagggcaaatccataggccag
tggtacggccccaacacggtggcacaggtgctcaaaaaacttgcaacttttgatacatgg
agttccctggcagtgcacatagccatggacaacacagtggtgatggaagaaatccggagg
ctgtgccagtccaatgtgccatgtgctggagctgcagcatgccctgccctggagtcagat
gtgctctacaatgggtgcccagaggacctggggctcagagggaggctccccctgtggaaa
ccactggtgctgctcatacctctccgcctcgggctcacagagatcaatgaagcttacatt
gaaacactaaagcactgcttcatgatgccccagtccctgggagtgatcggagggaagcca
aacagtgctcactacttcattggctatgtaggtgaggagctcatttacctggacccccac
accacgcagccggcggtggagcctggtgacagcggctgcctccccgacgagagcttccac
tgccagcaccccccgtgcaggatgagcatcgccgagctcgacccctccatcgccgtgggc
tttttctgcaacacagaggcagattttaatgactggtgccagcaaatcaaaaagctgtcc
ctggtcagaggagcgctgcccatgttcgagctggtggaacgccagccctcccacttctcc
aaccccgatgtcctgaatctcacaccagactcctctgatgccgacagattggaaaggttc
tttgactcggaagatgaagactttgaaatcctgtccctttga
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