Zonotrichia leucophrys gambelii (white-crowned sparrow): 135451513
Help
Entry
135451513 CDS
T09958
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
135451513 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zle04131
]
135451513 (VPS8)
Membrane trafficking [BR:
zle04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
135451513 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
zf-RING_Vps41
WD40_CDC20-Fz
Clathrin
TPR_Vps41
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_2
zf-RING_UBOX
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WDR55
Beta-prop_NOL10_N
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
135451513
NCBI-ProteinID:
XP_064576864
LinkDB
All DBs
Position
9:complement(5977591..6042732)
Genome browser
AA seq
1388 aa
AA seq
DB search
MAAALEPAEAEPCPEPPAHRLSVAELDRELDSRSELIDDKEFDIPQVDTPPTLESILNET
DDEEESFILEDPFLLNLDNTDTHSYDTSSVASSDSGDRTHLKRKKKLPDSLSLHGSVIRL
SLLKGISAQIVSAADKVDAGLPTAIAASNLIAVGTSHGLALIFDQNQALRLCLGSTAVGA
QYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGTAILHIKFTDDPT
LAICNDSGGSVFELSFKRVMGVRTCESRCLFSGSKGEVCCIEPLHAKVDLRDHPITQYSL
LAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVQNSVNPMLAFCRGDVV
YFLLVKRDDSGAIHVTKQRQLHLHYDLINFTWINSRTAVLLDSVEKLHVIDRQTQEELET
IEISEVQLVYNSSHFKSLATGGNVSEALALVGEKACYQSISSCGGQVFYLGTKSVHVMTL
RSWRERVDHLLKQERLTDALALAWSFYEGKAKAVVGLTGDTSKRKAVIADRMVEILLHYT
DRTLKKCPDQGKIQVMEQHFQDVVPVIVDYCLLLQRMDLLFNQIYDKMSENSVAKGIFLE
CLEPYILSDKLMGITAQVMKDLLLHFQDKNRLENLEACIVHMDITSLDIQQVVLLCWENR
LYDAMIYVYNSGMNDFISPMEKLFKVIAPPLNAGKSLTDEQVVMGNKLLVYISCCLAGRA
YPLGDIPEDLVPLVKNQVFEFLIRLHSAEGSVDEEVYPYVRTLLHFDTREFLNVLALTFE
DFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPNNTLFVNRTLFD
QVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIQMAEKAEFYQICEFMYERQL
RYDKIIGCYLRDPLRKEEVFNYIHNILSMPGYSAEEKQLVWQKALDHIEELLVLSPGKAA
DLAAIHFSEQLESIISNLQDQFLLFQFLRSLLDPREGINQDLLHLPPCVTEQFIELLCQY
SPDQVLETLKVLECCRLEETIQITQKHQLHEASSYLLEKKGDIHGAFLVMLERLQSKLLV
LTQDDESSAEPSLLENIEDTLMKTIALCQRNSHSLDQQQREALWFPLLEAMMSPQKSSGS
SQCPHSESLKSLTMQVLNNMAAFIALPSILQRILQDPVYGKGKLGEIQGLVLGMLDTFNY
EQTLLETTTSLLNHDLHWSLCNLRASVTRGLTPKQDYCCICLQQYKRRQETADEIIVFSC
GHLYHSLCLLSKECGVVTKGLMRWMCYKCNSSNKGGKLSENFSELKKGAAASLAQMSSES
VLDPQQIQAFDQLCRLNRGTSRLALLTELARGDKHGLLSVSHGDPATSSVFQNENFQLHL
TPPPLAEE
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggccctggagccagctgaggccgagccgtgcccggagccgcccgcgcaccgg
ctgagcgtggcggagctcgaccgtgagctggactctcgcagcgagctgattgacgacaaa
gaattcgacattcctcaagttgatacccctccaacgctggagagcatcctaaatgagact
gatgatgaagaagagtctttcattttggaggatccctttctcttgaaccttgataacaca
gacacacactcctatgacacctcttctgtggccagctctgacagtggggacaggacacac
ctgaaaaggaagaaaaaactcccagattctctctcactccatggatcagtgatccggctc
tcactcctgaaagggatttctgcccaaatagtgtctgcagcagacaaagtggatgctggc
ttgcccactgcaattgcagcatcaaatctgatagcagtggggacgtcccatgggttagca
ctgatattcgatcagaaccaggctctccggctgtgtctgggcagcaccgcggttggggcc
cagtacggggccatctctgctctcagcatcaacaatgactgctccaggctgctctgtggc
tttgcaaaaggacagatcaccatgtgggatctggccagtgggaagctgctgcggtcaata
acggatgcccaccctccaggaacagccattttgcacatcaagtttacagatgatccaaca
ctcgcaatttgcaatgacagcggaggctccgtgtttgaactgtcatttaagagggttatg
ggagtgaggacgtgcgagtctcggtgtctcttcagtggctctaagggggaagtttgctgt
attgagccattacatgccaaggttgatttgagagaccatcctatcacccagtactcactg
ctggccatggcctccctcaccaagatcctggttattggcctgaaaccttctctgaaagtg
tggatgacctttccttacggccgtatggacccttcgagtgtccccctgctggcgtggcac
tttgtggccgtgcagaactcggtgaaccccatgcttgccttctgccgaggagatgtcgtg
tacttccttctggtcaagagagatgatagtggtgcaatacatgtcacaaagcaaaggcag
cttcatctgcactatgatctcatcaactttacttggatcaactcacggacagcggtgctg
ctggacagcgtggagaagctgcacgtcatagaccgtcagacccaggaggagctggagacc
atcgagatctcagaggttcagctggtctacaacagcagccacttcaagtctctggccaca
gggggcaatgtcagcgaggccttggcactggttggagagaaagcttgttaccagtccatc
agcagctgtggtggtcaggtcttttaccttggaactaagtctgttcatgtcatgacattg
agaagctggagagagagagttgaccaccttctgaaacaagaacgtctcacagatgccctg
gctcttgcttggtccttttatgaaggtaaagcaaaggctgttgtaggcttgactggggac
acgagcaagaggaaagcagtcattgctgacagaatggttgaaatccttctccattacacc
gatcggactctgaagaaatgtcctgaccaaggaaaaatccaggttatggagcagcacttt
caggatgtggtgcctgtcattgtggattactgtctcctgctgcagcgcatggatctgtta
tttaaccagatatatgacaagatgagtgagaactctgtagccaaaggcatctttctggag
tgcttggagccatatatcttgagtgataagctgatgggaatcacagctcaagtgatgaaa
gacttgctgcttcacttccaagacaagaacaggttggaaaacttggaagcctgcattgtg
catatggatatcaccagtttagacatccagcaggtggttctgctgtgctgggagaaccgc
ctgtacgatgccatgatctacgtctacaacagcggcatgaacgacttcatcagccccatg
gagaagctgttcaaagtcattgctcctccactgaatgctggaaagtctctcacagatgag
caggtggtgatgggcaacaaactgcttgtgtacatcagctgctgcttggcaggccgtgca
tacccattgggtgatattcctgaggatctggtacctctggtgaaaaatcaggtgtttgag
ttcctgatcaggctgcactcagctgagggctcagtggatgaggaggtgtatccctacgtt
cgcaccctgctgcacttcgacacacgggagttcctcaacgtgctggctctgacttttgaa
gacttcaagaatgacaagcaagctgtggagtatcaacagagaattgtggacattcttctg
aaagtcatggtggagaattctgacttcaccccatcacaggttggctgtctctttaccttc
cttgcccggcagctcgccaagcccaacaacaccttgtttgtcaacaggacactgtttgac
caggtgctggagttcctgtgcagccccgatgatgattcccggcattccgagaggcagcag
gtccttttggagctgctccaggcaggagggatcgtgcagtttgaggagagccgccttatc
caaatggcagagaaggctgagttctatcagatctgtgagttcatgtacgagcggcagctt
cgctatgacaaaatcatcggctgttacctgcgggatcccctgaggaaggaagaagttttc
aactacatccacaacatcctgtccatgcctggctacagtgcagaggagaagcagctggtg
tggcagaaagctttggaccacatagaggagctgctggtgctgagcccaggtaaagcagct
gacctggcagccattcacttcagcgagcagctcgagagcatcatctccaacctgcaggac
cagttcttgctcttccagttcctgaggagtctccttgatccaagagaaggcattaaccaa
gacctgctacacctcccaccctgtgtcactgagcagttcatcgagctgctctgtcagtac
agcccagaccaggttttggagacactcaaagttctggaatgctgcagactggaggaaacc
atccagataacccaaaaacatcagcttcatgaggcttcctcatatttactagagaagaag
ggagatatccatggtgcctttttggttatgcttgagcgattgcagagcaaattgctggtg
cttactcaagatgatgaaagctcagctgaaccctccttgctagaaaatattgaagatact
ttaatgaaaacaattgctctttgccagaggaattcacacagtttagaccagcaacagcga
gaggccctctggtttcccctgcttgaggccatgatgtccccacagaaatcctctggttca
tcacagtgtccacactctgaatctttgaagagtttgacaatgcaagtgctgaacaacatg
gctgcatttattgctctgccctcaatcctgcagaggattctccaggatccagtttatgga
aaagggaaacttggagaaattcaagggcttgtcctgggaatgctggacacttttaactat
gaacagaccctgctagagacaaccacgagccttctaaaccacgatctccactggtccctg
tgtaacctgagagcctctgtcaccagaggcctgaccccaaagcaggattactgctgcatc
tgtctccagcagtacaaaaggaggcaagaaactgctgatgaaatcattgttttcagctgt
ggccacttgtaccactcgctgtgcctgctgagcaaggagtgtggggtggtcaccaagggc
ctcatgaggtggatgtgctacaaatgcaactccagcaacaagggagggaagctgagtgag
aacttctcagagctgaagaaaggggctgcagcctccctggcacagatgagttcagagtct
gtgttggatcctcagcaaatccaagcttttgaccagctctgccggctcaaccgaggcacc
tcccgactggctctcctgacggagctggcacgcggtgacaagcacgggctgctcagcgtt
tcccacggggacccggccaccagcagcgtcttccagaacgagaacttccagctgcacctg
acgccccctccgctggctgaggagtag
DBGET
integrated database retrieval system
