KEGG   Zonotrichia leucophrys gambelii (white-crowned sparrow): 135451581
Entry
135451581         CDS       T09958                                 
Symbol
POLR2D
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
zle  Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03020  RNA polymerase
zle03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:zle00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    135451581 (POLR2D)
  09124 Replication and repair
   03420 Nucleotide excision repair
    135451581 (POLR2D)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zle03021]
    135451581 (POLR2D)
   03400 DNA repair and recombination proteins [BR:zle03400]
    135451581 (POLR2D)
Transcription machinery [BR:zle03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     135451581 (POLR2D)
DNA repair and recombination proteins [BR:zle03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      135451581 (POLR2D)
SSDB
Motif
Pfam: RNA_pol_Rpb4 Tfb4 Maelstrom
Other DBs
NCBI-GeneID: 135451581
NCBI-ProteinID: XP_064576993
LinkDB
Position
9:3792297..3797995
AA seq 142 aa
MAAGGSDPRTADVEEDASQLVFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEV
FMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLEG
RFEDEELQQILDDIQTKRSFQY
NT seq 429 nt   +upstreamnt  +downstreamnt
atggcggcgggcggcagcgacccgcggacggcagatgtggaggaggacgcctcgcagctc
gtcttccccaaagaatttgaaaccgcggaaaccctgctgaattccgaggtgcacatgctg
ctggagcaccgcaagcagcagaacgagagcgcggaggatgagcaggagctgtcggaggtg
ttcatgaaaaccctgaactacacagcgcgcttcagccgcttcaaaaaccgcgagaccatc
gccagcgtgcgcagcttactgctgcagaagaagctccataagtttgaactggcatgtttg
gctaacttgtgtcctgagacagctgaggaagcaaaagctctgattcccagcctggagggc
cggtttgaggatgaagagttacagcagattctcgatgacatccagactaaacgcagcttc
cagtattga

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