KEGG   Zonotrichia leucophrys gambelii (white-crowned sparrow): 135451609
Entry
135451609         CDS       T09958                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
zle  Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03030  DNA replication
zle03410  Base excision repair
zle03420  Nucleotide excision repair
zle03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:zle00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    135451609 (RFC4)
   03410 Base excision repair
    135451609 (RFC4)
   03420 Nucleotide excision repair
    135451609 (RFC4)
   03430 Mismatch repair
    135451609 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:zle03032]
    135451609 (RFC4)
   03036 Chromosome and associated proteins [BR:zle03036]
    135451609 (RFC4)
   03400 DNA repair and recombination proteins [BR:zle03400]
    135451609 (RFC4)
DNA replication proteins [BR:zle03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    135451609 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    135451609 (RFC4)
Chromosome and associated proteins [BR:zle03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    135451609 (RFC4)
DNA repair and recombination proteins [BR:zle03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     135451609 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    135451609 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_lid_RFC1 AAA_assoc_2 Rad17 AAA_16 AAA_30 AAA_22 AAA_11 DUF815 SLFN-g3_helicase AAA_24 Mg_chelatase AAA_19 RuvB_N TIP49_C AAA_5 DNAX_ATPase_lid ResIII bpMoxR UvrD-helicase ParB AAA_28 AAA_7
Other DBs
NCBI-GeneID: 135451609
NCBI-ProteinID: XP_064577049
LinkDB
Position
9:complement(17318649..17330739)
AA seq 362 aa
MQAFLKGPASISTKPVAAKEKNAAGSSGEGKRTKPIPWVEKYRPKNVDEVAFQDEVVAVL
KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGADLFRQRVLELNASDERGIQVIREK
VKAFAQLTASGSRSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY
ISRIIEPLTSRCSKFRFKPLSDSIQQQRLLDVSEKENVKISNEAVSYLVKVSEGDLRKAI
TFLQSATRLMGGKEITEKIITEIAGVIPKEAIDELLLGCQSGSFEKLEALAKNLINEGFA
VAQLVNQLHDTIVESEDYSDKQKSAIVEKLAEVDKCLADGADEFLQLMSLCALVMQQLTQ
NI
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgcaggccttcctcaagggcccggcctctatcagcaccaagcccgtcgctgccaaagaa
aagaacgcggccgggagcagcggggagggcaagaggaccaaacccatcccctgggtggag
aaatatcgtcccaaaaatgtggatgaagttgcattccaggatgaagttgtagctgtgctg
aagaagtccctggaaggtgctgatcttcccaatctgttgttctatggcccacctggaact
ggaaagacttccactattttagcagctgctagagaactgtttggggctgatttattccgg
cagagagtccttgagctgaatgcttctgatgagcgtgggatacaagtgatccgcgagaaa
gtgaaggcttttgctcagctgacggcctctggaagccgttcagatggtaaaatgtgtcct
ccttttaaaattgtgatcctggatgaagcagactccatgacttcagcagcccaggcagcc
ttaagacgcacaatggaaaaagaatccaaaacaacacgtttctgtcttatctgtaactac
atcagcagaataattgaacctttaacgtctcgatgctccaaattccgcttcaagcctttg
tctgacagcatccagcagcagaggctgttggatgtttctgagaaggaaaatgtgaaaatc
agtaatgaggcagtgtcatacctggttaaagtgtcagaaggggacttgagaaaagcaatt
acttttcttcaaagtgccactcgcctaatgggtgggaaggagatcacagagaagataatc
actgaaattgctggggtaatccctaaagaagcaattgatgagctgctcttgggctgccag
agtggttcctttgagaaactggaagcactggcaaagaatctcatcaatgaggggtttgct
gttgctcagcttgtaaaccagctgcatgacaccatcgtggagagtgaggattacagcgac
aagcagaaatctgccatagttgagaaacttgcagaagtggacaaatgcctggcagacggt
gctgatgaattcctgcagctgatgagtctctgtgcccttgtgatgcagcagctcacacag
aacatctga

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