Zonotrichia leucophrys gambelii (white-crowned sparrow): 135451945
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Entry
135451945 CDS
T09958
Symbol
TRIP12
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
135451945 (TRIP12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zle04121
]
135451945 (TRIP12)
Enzymes [BR:
zle01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
135451945 (TRIP12)
Ubiquitin system [BR:
zle04121
]
Ubiquitin ligases (E3)
HECT type E3
135451945 (TRIP12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
UNC45-central
HEAT_2
HEAT_Maestro
Motif
Other DBs
NCBI-GeneID:
135451945
NCBI-ProteinID:
XP_064577691
LinkDB
All DBs
Position
9:complement(10534867..10611161)
Genome browser
AA seq
2066 aa
AA seq
DB search
MSNRPSNNPGGSLRRSQRNTAGAQPQDDAVGGRSQLGQAKHKAHSPPESRKSISKTPKVQ
SNTTSEQSKGYFSKRGCSSSAVLIPQQEDPERVNTSEKQKTGQVPKKDNSRGVKRSASPD
YRRTNSPSSAKKPKALQHTETSSETNKPHTKSKRRHSDQELPKSTQLPSTSKAHTRKGGA
AGSSRSQKRKRTENLSCIESGSSVESTGTEEKSAKVSKLASKSVTSAKAGCSTITDSSSS
ASTSSSSSAVASASSTVPQGARVKQGKDQSKARRSRSASSPSPRRSSRDKEPSKTGGSSK
FDWAARFSPKVSLPKTKLSLPGSSKSETSKPGPSGLQAKLASLRKSTKKRSESPPAELPS
LRRSTRQKTTGSCASTSRRGSGLGKRGAAEARRQEKMADPDNNQDGVNSSAARTDEPPQG
AAASSSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIGS
GASSKAQQLLQGLQATDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEH
NFDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRH
SKAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVADSLPLLTQRLTH
QDKKSVESTCLCFARLVDNFQHEENLLQQVASKDLLTNIQQLLVVTPPILSSGMFIMVVR
MFSLMCSNCPTLAVQLMKQNIAETLHFLLCGASNGSCQEQIDLVPRSPQELYELTSLICE
LMPCLPKEGIFAVDTMLKKGNAQNTDGAIWQWRDDRGLWHPYNRIDSRIIEAAHQVGEDE
ISLSTLGRVYTIDFNSMQQINEDTGTARAIQRKPNPLASTNTSGHSELKKDDARAQLMKE
DPELAKSFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIYFADAELLKDVLKNHAVSSH
IASMLSSQDLKIVVGALQMAEILMQKLPDIFSVYFRREGVMHQVKNLAESEALLTSPPKV
CTNGSGTLGTTTTISTGTATAASNAAADLGSPSLQHSREDSLDLSPQGRLSDVLKRKRLP
KRGPRRPKYSPPRDDDKVDNQAKSPTTTQSPKSSFLASLNPKTWGRLSTQSNSNNIEPAR
TAGVSGLARAASKDTISNNREKIKGWIKEQAHKFVEHYFSSENMDGSNPALNVLQRLCTA
TEQLNLQVDGGTECLVEIRSIVSESDVSSFEIQHSGFVKQLLLYLTSKSEKDAVSRDIRL
KRFLHVFFSSPLPGEEPLGRLEPLENAPLLALVHKMNNCLSQMEQFPVKVHDFPSGNGTG
SSFSLNRGSQALKFFNTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRG
YGRVREDDEDSDDDGSDEEIDESLAAQFLNSGNVRHRLQFYIGDHLLPYNMTVYQAVRQY
SLQAEEERESTDDESNPLGRAGIWTKTHTIWYKPVREDEDGNKDCVGGKRGRAQTAPTKT
SPRNSKKHDELWHDGVCPSVLNPLEIYLISTPPENITFEDPSLDVILLLRVLHAISRYWY
YLYDNAVCKEIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDT
RQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTVNRDELLKQAESVM
QDLGSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLANPKGSQEG
TKYIHNLQGLFALPFGRTAKPAHIAKVKMKFRFLGKLMAKAIMDFRLVDLPLGLPFYKWM
LRQETSLTSHDLFSIDPVVAKSIYHLEDIVRQKKRLEQDKTQTKESLQYALEALTMNGCS
VEDLGLDFTLPGFPNIELKKGGKDTPVTIHNLEEYLRLVIFWALNEGVARQFDSFRDGFE
SVFPLSHLQYFYPEELEQLLCGSKTDTWDAKTLMECCRPDHGYTHDSRAVKYLFEILSSF
DSEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLP
DYSTIEIMREKLLIAAREGQQSFHLS
NT seq
6201 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctagtaacaatccaggggggtcactgcgacgttcacagaggaacact
gccggggcccagccacaagacgacgcagtaggaggaaggtcacaattagggcaggcaaag
cataaggcacatagccctcctgagagtagaaaatctatttcaaagacacccaaagtgcag
tctaatactacttctgaacagtccaagggatacttttctaaaagaggctgtagttcatct
gctgttttaataccacaacaagaagatccagagagagtcaatacttcagaaaagcaaaaa
acggggcaagtgcctaagaaagacaattctcgaggagttaaacgcagtgctagtccagat
tacaggaggaccaattctcctagctctgctaaaaaacccaaagcacttcaacacactgaa
acttcctcagaaactaacaagccacatactaaatctaagagaagacactcagaccaagag
ctgcccaagtctacacaattgccatcaacaagcaaggctcacaccagaaagggtggagct
gctggtagctcccgaagtcagaaaaggaaaaggacagagaatctgtcttgtatagagagt
gggtcatcagttgaatcaactggcactgaagaaaagtcagcaaaagtctccaagctggct
tcaaaatcggtgacctcagccaaagctgggtgtagcaccatcaccgattcttcttcttca
gcttccacctcctcctcctcttctgctgttgcctctgcttcttctactgttcctcagggt
gccagagtgaaacagggaaaggaccagagtaaggctagacgttcccgttctgcatccagc
cccagtccaagaaggagtagcagggacaaagaaccaagtaaaacaggtggctcttcaaag
tttgactgggctgctcgatttagccccaaagtcagtctccctaaaacaaaactgtctcta
ccaggctcttccaagtcggagacatcaaaacctggaccttcaggactacaggctaagcta
gcaagtctaagaaaatccacaaagaagcgcagtgaatcaccacctgctgagctccccagt
ttacggcggagcacacggcaaaagaccacgggctcctgtgctagcaccagtcggcgaggc
tctggcctgggcaaaagaggagcagctgaagctcgccgacaggagaagatggctgatcct
gacaacaaccaggatggagttaactcttcagctgcacggacagatgaacctccccaggga
gctgcagcttctagttctgttgctggagctgtaggtatgacaacttctggagaaagtgag
tcagatgattctgagatgggaagactacaagctctattagaggctaggggtcttcctcct
cacctgtttggccctcttggtcctcggatgtcgcagctcttccacaggacaattggaagt
ggagctagttctaaagctcaacagcttttacaaggtctccaagccactgatgaaagtcag
caactacaggcagtgattgagatgtgccagctcttggttatgggaaatgaagaaacatta
ggagggtttccagtcaagagtgttgtaccagctttgataacactgctgcagatggagcac
aactttgacattatgaatcatgcgtgtcgggccttaacatacatgatggaagcacttccc
agatcatctgctgtagtggtagatgcaattcctgtcttcttggaaaagctgcaagttatc
cagtgcattgatgtggcagagcaggcgctcacagccctggagatgttgtcacgcaggcac
agtaaagccattctgcaggcaggtgggttggcagactgtttgctgtatctggaattcttc
agtataaatgcacaaaggaatgcactagctatcgctgccaactgctgccagagtataaca
cctgatgagtttcactttgtggcagactctttgccactgctaacacaaaggctaacccat
caggacaaaaagtctgttgaaagcacttgtctgtgttttgcacggctagtggacaacttc
cagcatgaagagaacttgctgcagcaggttgcttccaaggacttgttgacaaatatccag
cagctcctggtcgtgacacctcctatcctgagctcaggaatgttcatcatggtggtgcgc
atgttctccctgatgtgctccaactgccccacacttgcagtccagcttatgaagcaaaat
attgcagaaacgcttcactttctcctttgtggagcctcaaatgggagttgtcaagaacaa
attgaccttgttccacgaagtcctcaagaactttatgaacttacttctcttatctgtgaa
ctgatgccttgcctgccaaaagaggggatctttgctgttgatactatgctaaagaaagga
aatgcacaaaatacagatggtgcaatatggcaatggcgagatgacaggggtctctggcat
ccctataacaggattgatagtcgaataatagaggcagctcatcaggttggtgaggatgag
ataagcctgtctacgcttgggcgtgtctatactattgattttaactctatgcagcaaata
aatgaggatactggaacagctcgtgccattcagcgaaaaccaaaccctttagccagtaca
aacactagtggacattcagaattgaagaaggatgatgctcgagcacagttaatgaaagag
gacccagaactggcaaaatcctttatcaaaacactgtttggtgttctttatgaagtatat
agttcttcagctggacctgctgttagacacaagtgccttagagcaattcttaggataatt
tattttgctgatgctgaacttctgaaggatgtgctgaaaaaccatgctgtttcaagtcat
attgcctccatgctgtcgagtcaagaccttaagatagtagttggagccctgcagatggca
gagattttaatgcaaaagttacctgacatttttagtgtttacttcagaagagaaggggtg
atgcaccaagtgaaaaacttggcagagtctgaggctttgctaacaagccccccaaaagta
tgcaccaatgggtcaggaacgctgggaaccactacaaccataagtactgggacagccact
gctgccagcaatgcagctgcagatctgggctctcccagcttgcagcacagccgggaggat
tccttggatctgagcccacagggacgactgagtgatgttctaaagagaaaaagactgcca
aaacgagggccaaggagaccaaaatactcccctccaagagatgatgacaaagtagacaat
caagctaaaagccctacaactacgcagtctcctaaatcatctttcttggcaagtttgaat
cctaaaacatggggaagattaagcacacagtccaacagtaataatattgaaccagcacga
acagcaggagtaagtggtcttgcaagggctgcttccaaggataccatttccaataacaga
gaaaaaattaagggctggatcaaggagcaagcccataaatttgtagaacattactttagt
tctgaaaacatggatggaagcaatcctgcactaaatgtactacagagactttgcactgca
actgaacaactcaacctccaggtggatggtggaacagagtgccttgtagaaatccgtagc
attgtctcggaatctgacgtctcctcatttgaaatccagcatagtgggtttgttaaacaa
ctgctgctctatttgacatctaaaagtgaaaaagatgctgttagcagggatatcagattg
aaaagatttcttcatgtatttttttcttctccacttcctggagaagagcccctgggaaga
ttagagccattagaaaacgcacctttgttggcattagtccataaaatgaacaactgcctc
agtcagatggaacagtttcctgtgaaagtgcatgacttccctagtggaaatggaacaggg
agcagtttttctcttaacagaggatcccaagctttaaagttcttcaatacacatcaatta
aaatgccagctgcaaagacatccagactgtgctaatgtgaaacagtggaaaggtggacct
gtgaagattgatcctctggctttggtacaagccattgaaagataccttgtagttagaggc
tatggaagagttagagaagatgatgaagatagtgatgatgatgggtcagatgaagaaata
gatgaatctttggctgctcaattcttaaattcagggaatgtgagacatagattgcagttt
tacattggagatcacttgctgccatacaatatgactgtgtaccaggcagtcaggcagtac
agtttgcaagctgaggaagagagggagtctacagatgatgaaagtaacccactggggaga
gctgggatttggacaaaaacacacaccatttggtacaaacctgtgcgagaggatgaagat
ggtaataaggactgtgttgggggtaaaagaggaagagcacaaactgctcccacaaaaacc
tcccctaggaattctaaaaaacatgatgaattgtggcatgatggtgtgtgcccttcggtg
ttaaatccactggaaatttacctcatatctactccacctgaaaatataacatttgaagac
ccctcattagatgttattcttcttttgagagttttacatgctatcagccgatactggtat
tacttgtatgataatgcagtctgcaaggagataattccaacctcagagtttatcaacagt
aaactgacagcaaaagcaaacaggcagcttcaggatcctttggtaattatgacaggaaac
atcccgacttggctgacagaacttggaaaaacatgcccatttttctttccatttgacacc
cgccaaatgctgttttatgtgacggcctttgatcgtgatcgagccatgcaaaggctgctg
gacactaacccagaaatcaatcagtcagattctcaggatagcagagtggcaccaagactg
gacaggaaaaaacgcactgtgaacagagatgagctgttgaaacaggcagaatctgtgatg
caggatctaggcagttcaagagccatgttggaaatccagtatgagaatgaagttggcaca
ggcctaggccctacactagagttctatgcacttgtatctcaggaactacagagagcagac
ttgggcctttggaggggagaagaagtgactttagccaatccaaaaggaagccaggaaggt
accaagtacattcataaccttcaaggcctttttgcacttccttttggtagaacagccaag
ccagctcacattgcaaaagttaaaatgaagttccgctttctgggaaaactaatggccaag
gcaatcatggacttcagactggtggatcttccccttggacttcctttttataagtggatg
ctgcgacaggaaacttccttgacatcgcatgacttgttcagtattgatccagtagtagcc
aaatcaatatatcaccttgaagatattgtaagacaaaagaaaagacttgaacaggataaa
actcagaccaaagaaagtctacagtatgcattggaggctctgactatgaatggctgctca
gtggaagatctagggctggacttcacactccctgggtttcccaacatagagctgaaaaag
gggggaaaagatacaccggtcaccatccacaatttagaggagtatctcagattggttata
ttctgggcactaaatgaaggtgttgccagacagtttgactccttcagagatggatttgag
tcggtgttcccccttagtcatcttcagtacttctatcctgaggagttggagcagctcttg
tgtggcagcaagacagacacttgggatgcaaagactttaatggaatgttgcaggcctgat
cacggttatacgcacgacagtcgagcagtgaagtatctctttgaaattctcagtagtttt
gatagtgagcagcagagactgtttctccagtttgtgacaggcagccccagactgcctgta
ggaggttttcgaagtttgaatcctcccctgacgattgtacggaagacatttgagtccaca
gagaatcccgatgatttcttaccctcagtaatgacttgtgtgaactatctcaaattgccg
gactattcaactattgagataatgcgtgaaaaactcttgatagctgcaagagaagggcag
cagtcattccatctttcctga
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integrated database retrieval system
