Zonotrichia leucophrys gambelii (white-crowned sparrow): 135452524
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Entry
135452524 CDS
T09958
Symbol
NEO1
Name
(RefSeq) neogenin isoform X1
KO
K06766
neogenin
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04350
TGF-beta signaling pathway
zle04514
Cell adhesion molecule (CAM) interaction
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
135452524 (NEO1)
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
135452524 (NEO1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
zle04515
]
135452524 (NEO1)
Cell adhesion molecules [BR:
zle04515
]
Immunoglobulin superfamily
DCC/UNC5 family
135452524 (NEO1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Neogenin_C
fn3
I-set
Ig_3
Ig_2
Pur_ac_phosph_N
ig
Fn3_VIN3
FN3_DSCAM-DSCAML_C
V-set
Interfer-bind
Tissue_fac
C2-set_2
C1-set
TMEM154
TM_ErbB1
EphA2_TM
Herpes_UL74
FAM176
Motif
Other DBs
NCBI-GeneID:
135452524
NCBI-ProteinID:
XP_064578774
LinkDB
All DBs
Position
10:2796735..2979954
Genome browser
AA seq
1466 aa
AA seq
DB search
MAARRARRLLGSLCIALLFAQSAPTVAAARSGSRSLLTESLVRTFTPFYFLVEPLDVVAV
RGMSVVMNCSAQCETPSRIEWRKDGSLLNLVSDDRRQLLPDGSLLINSVVHSKHNKPDEG
YYQCVATVDSLGTIVSRTAKLTVAGLPRFTRQPEPTWVRRGGSAVLACEVTAELAPLLRW
ERERQALGAEARALQLPGGSLLLSNASAADAGLYRCVLDTPGSPKYSEEAELRVLPDAEE
PEKLALLKAPSSLSRLAGQSALLPCVAAGFPPPLVRWARNGEELPNDGSGRFQLLPGGVL
EIRDVTEADAGTFTCIAESGNDTLEAQAELAVQVPPTFLKRPANIYAHESMDIVFECEVT
GKPTPTVKWVKNGDVVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNAQAGAQL
IILDLDVAIPTLPPTSLTSATNDHLAAAAAGPLPSAPRDVVATLVSTRFIRLTWRPPASD
PHGDNLTYSIFYTKEGVNRERVENTSRAGETQVMIQSLMPETVYVFRVVAQSRHGPGESS
APLKVATQPEVQLPGPAPNIRAFSSSPTSVTVTWETPLSGNGDIQNYKLYYMEKGQHTEQ
DVDVAGLSHTLTGLKKFTEYSFRVVAYNKHGPGVSTHDVVVRTLSDVPSAPPQNLTLEVR
NSKSILLQWQPPPAGTQSGQITGYKIRYRRVARKSDVTESVAGTQLSQLIEGLERGTEYS
FRVAAMTINGTGPATDWVSAETFESDLDESRVPEVPSSLHVRPLVTSIVVSWTPPENQDV
VVRGYAIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAV
TRPHSDTSEVDLFVINAPYTPVPDPSPMMPPVGVQASILSHDTIRITWADNSLPKNQKIT
DARFYTVRWKTNIPANTKYKTANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAH
GTTFELVPTSPPKDVTVVSKEGKPRTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWV
IEPVVGNRLTHQIQELTLDTPYFFKIQARNSKGMGPMSEAVQFRTPKAESSDKMPNDQAS
GSAGKGSRPLDLGPDYKPPLGGSNSPHGSPTSPLDSNMLLVIIVSVGVITIVIVVIVAVF
CTRRTTSHQKKKRAACKSVNGSHKYKGNSKDVKPPDLWIHHERLELKPIDKSPDPNPIMT
DTPIPRNSQDITPVDNSMDSNIHQRRNSYRGHESEDSMSTLAGRRGMRPKMMMPFDSQPP
QPVISAHPIHSLDPPHHHFHSGSLASPTRSFLQHQLSPWPLGSAMSHSDRADSTESVRNT
PSTDTMPAGSAVPSAELAEPEGPFLPAEEEPQGPPTAHVRPSHPLKSFAVPAVPNAGGPF
DPALPSTPLLSQQAPGHPLHAVKTASIGTLGRTRPPMPVVVPSAPEVQETTRMLEDSESS
YEPDELTKEMAHLEGLMKDLNAITTA
NT seq
4401 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcggagagcccggcggctcctcggctccttgtgcatcgcccttctcttcgcg
cagtccgcgccgaccgtcgccgcggcgcggagcggctcccggagcctcctgacggaatcg
cttgtgagaaccttcactcctttctacttcctggtggagcccctggacgtggtggcagtg
cgagggatgtcggtggtgatgaactgctcggcgcagtgtgagaccccgtcgcggatcgag
tggaggaaggacggctccctcctcaacctcgtgtccgacgaccggcgccagctgctgccc
gacgggtctttgttaatcaacagcgtggtgcactccaagcacaacaaacctgatgaggga
tattatcagtgtgtggcaactgtggacagcctggggaccatcgtgagcaggacagccaag
ctcaccgtggcaggcctgcccaggttcacgaggcagccggagcccacgtgggtgcgccgc
gggggcagcgccgtgctggcctgcgaggtgacggccgagctggcgccgctgctgcgctgg
gagcgcgagcggcaggcgctgggcgcggaggcgcgggcgctgcagctgcccgggggctcc
ctgctgctcagcaacgcctcggctgccgacgcggggctctaccgctgcgtgctcgacacc
cccggcagccccaagtacagcgaggaggccgagctccgagtcctgccagatgcagaggag
ccggagaagctggcgctgctgaaggcgccctcgtcgctgagccgcctggccgggcagagc
gcgctgctgccctgcgtggctgccggcttccccccgcccctcgtcaggtgggcacggaac
ggggaggagcttcccaacgatgggtctgggcggttccagctgctgccagggggggtgctg
gagatccgggatgtgaccgaggccgatgccgggaccttcacctgcatcgctgagagcggc
aacgacaccctggaggcacaggcagagctggcagtgcaagttccccccacgttcctgaag
cgccctgccaacatctacgcgcacgagtccatggacatcgtgtttgagtgcgaggtgacc
gggaagccaacgccgaccgtcaagtgggtcaagaacggggacgtggtgatccccagcgac
tacttcaaaatcgtgaaagaacataacctgcaagttttggggctggtgaagtctgatgaa
ggattctatcagtgcattgcagaaaacgatgtcggaaatgctcaggctggagcccagctg
ataatacttgaccttgatgttgccatcccaacattacctcccacttcactgaccagtgcc
actaatgaccatctagcagcagcggcagcgggacccctgccctcggccccgcgggacgtc
gtggccaccctggtgtccacccgcttcatccggctcacgtggcgcccgcccgcctccgac
ccgcacggggacaacctcacctactccatcttctacaccaaggagggcgtcaacagggaa
cgtgtggaaaacacgagtcgtgctggagagacgcaggtgatgatccagagcctgatgcca
gagacagtctatgtgttccgcgtggtggcccagagccggcacggccccggcgagagctcg
gcaccgctcaaggtggcaacgcagcccgaggtccagctgcccggccccgctcccaacatc
cgtgccttctccagctcccccaccagcgtcactgtcacctgggagacaccgctctcgggc
aacggggacatccagaactacaaactgtactacatggagaagggacagcacacagagcag
gacgtggacgtggcagggctgtcccacacgctgacagggctgaagaagttcaccgagtac
agcttccgcgtggtcgcctacaacaagcacggccccggcgtctccacccacgacgtcgtg
gtgcgcaccctgtccgacgtccccagtgctccaccccagaacctaacgctggaggtccgg
aattccaagagcatcctgctgcagtggcagccccctcctgccgggacccagagcgggcag
atcacgggctacaagatccgctaccgcagggtggcccgcaagagcgacgtcaccgagagc
gtggcgggcacccagctctcgcagctcatcgagggtttggagcggggcactgagtacagt
ttccgcgtggccgccatgaccatcaacggcaccgggcccgccaccgactgggtgtcagct
gagaccttcgagagcgacctggatgagagccgcgtgcccgaggtgcccagctcgctgcac
gtgcgcccgctggtcaccagcatcgtggtgagctggaccccgcccgagaaccaggacgtg
gtggtcaggggctacgccatcggctacggcatcggcagcccccacgcccagaccatcaag
gtggactacaagcagagatactacaccattgagaacctggatcccagctcccactacgtg
ataaccctgaaagccttcaacaacgtgggggaggggatccccctgtacgagagcgccgtg
acccggccccactcggacacttccgaggttgatttgtttgttattaatgctccatacact
ccagtgccagatccgtctcccatgatgcccccggtgggagttcaggcttccatcctgagc
catgacaccatcaggatcacttgggcagacaactccctgcccaagaaccagaagatcacg
gacgcgcgcttctacaccgtccgctggaaaaccaacatccctgccaacaccaagtacaag
actgcaaatgccaccaccctgagctacctggtgacggggctgaagccaaacaccctctac
gagttctcagtgatggtgaccaagggcaggagatccagcacctggagcatgacagcacat
gggacaacctttgaattagtgccaacctctccccccaaggacgtgactgtggtgagcaag
gagggcaagccccgcaccatcatcgtcaactggcagccgccctccgaggccaacggcaaa
atcacaggctacatcatctactacagcacggacgtcaacgccgagatccacgactgggtc
atcgagcccgtggtgggcaacaggctcacccaccagatccaggagctcaccctggacacc
ccctacttcttcaagatccaggcccgcaactccaagggcatggggcccatgtccgaggcc
gtgcagttccgcacccccaaagctgagtcctcagataaaatgcccaatgaccaagcctca
ggatctgctggcaaggggagccgccccctggacctgggcccggactacaaacccccgctg
ggaggcagtaacagcccccatggcagccccacatcccccctggacagcaacatgctgctg
gtgatcatcgtgtccgtgggcgtcatcaccatcgtcatcgtcgtcatcgtcgccgtcttc
tgcacgcgccgcaccacgtcccaccagaaaaagaaacgagccgcctgcaaatccgtgaac
ggctcccacaagtacaagggcaactccaaagatgtcaaacctccagacctctggatccat
cacgagaggctggagctcaaacccattgataaatccccagatcccaaccccatcatgaca
gacacccccatccctcgcaactcccaggacatcaccccggtggacaactccatggacagc
aacatccatcaaaggaggaattcctacagaggacacgagtcagaggacagcatgtccacg
ctggcaggaaggaggggcatgaggcccaagatgatgatgccttttgattctcagccacct
cagcctgtgattagtgctcatcccatccattccctcgacccccctcaccaccatttccac
tccggcagcctcgcctctccaacccgcagcttcctgcagcaccagctcagcccgtggccc
ctgggctctgccatgtcccattcggacagggccgactccacagagtccgtccggaacacg
cccagcacggacacgatgccggcgggctcggccgtgcccagcgcggagctggcggagccc
gaggggccgttcctgcccgccgaggaggagccgcagggcccccccacggcccacgtgcgc
ccctcgcaccccctcaagagcttcgccgtgcccgccgtgcccaacgccgggggccccttc
gaccctgccctgcccagcacccccctgctgagccagcaagcccccgggcaccccctgcac
gcggtgaagacggcgtccatcggcaccctgggcaggacccggccgcccatgcccgtggtg
gtgcccagcgcccccgaggtgcaggagaccacgcgcatgctggaggactcggagagcagc
tacgagcccgacgagctgaccaaagagatggcgcacctggaggggctcatgaaggacctg
aacgccatcaccacggcgtga
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