Zonotrichia leucophrys gambelii (white-crowned sparrow): 135452724
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Entry
135452724 CDS
T09958
Symbol
SF3B3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135452724 (SF3B3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zle03021
]
135452724 (SF3B3)
03041 Spliceosome [BR:
zle03041
]
135452724 (SF3B3)
03036 Chromosome and associated proteins [BR:
zle03036
]
135452724 (SF3B3)
Transcription machinery [BR:
zle03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
135452724 (SF3B3)
Spliceosome [BR:
zle03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
135452724 (SF3B3)
Complex B
135452724 (SF3B3)
Complex C
U2 SnRNP specific factors
135452724 (SF3B3)
Chromosome and associated proteins [BR:
zle03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
135452724 (SF3B3)
TFTC complex
135452724 (SF3B3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
135452724
NCBI-ProteinID:
XP_064579174
LinkDB
All DBs
Position
11:complement(7864613..7894198)
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AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNVFEKIHQETFGKSGCRRIVPGQY
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILCCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG
DEWYVLVGVAKDLILNPRSVAGGFVYTYKLVNSGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYICGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTATLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtacaacctaacgttgcagcgtgccacgggcattagctttgccatccatggc
aatttctcaggaaccaaacaacaagaaattgttgtttcccggggcaagatcctggagttg
ctgcgccccgatcccaacacgggcaaggttcacacgctgctgaccgtggaggtgtttggg
gtcatccgctccctcatggccttcaggctgacggggggcaccaaggattacatcgtggtg
ggcagcgactcggggcgcatcgtcatcctggagtaccagccctccaagaacgtcttcgag
aagatccaccaggaaacctttggcaagagtggctgtcgcaggatcgttccaggccagtac
ctggctgtggacccaaagggccgtgctgtcatgatcagtgccattgaaaagcagaagctg
gtgtatatcctgaacagagatgctgctgctcgactcaccatctcctcccctctggaggcc
cacaaggccaataccttggtctaccacgtggtgggagtcgacgtggggtttgaaaaccca
atgtttgcttgtctggaaatggattatgaggaagcagacaacgatccaacaggtgaagct
gcagccaacacacagcagacattgacattttatgaactggacttgggtttgaaccatgtt
gtcaggaaatacagtgagcccctggaagagcatggcaacttcctcataacagttcctggt
ggttctgatggccccagtggggtgctgatctgttctgaaaactacattacttacaaaaac
tttggtgaccagcctgatatcagatgcccaattcccaggagacggaatgacttggatgat
ccagagaggggtatgatctttgtctgctctgctacacataagaccaagtccatgttcttc
ttcctggcccagacagagcagggagacatcttcaaaatcactctggagactgatgaagac
atggtaacagagattcgactgaagtactttgacactgttcctgttgctgctgccatgtgt
gtgctgaaaacaggatttctctttgtggcatctgaatttggaaaccattacctgtaccag
atagctcacctgggggatgatgatgaggagccagagttttcctctgccatgcctcttgag
gaaggagacacattctttttccagcctcgacctctgaagaacctggtgctggtggatgag
ttggacagtttgtctcctattctgtgttgtcagatagcagatttggccaatgaagacaca
ccccagttgtatgtggcttgtggtcgggggcccaggtcatccctgagggttttgagacat
ggacttgaggtatctgaaatggctgtctcagagctgcctggtaaccccaatgctgtatgg
actgtgaggagacatgttgaagatgaatttgatgcctacattatcgtgtccttcgttaat
gccacactggtgctgtctatcggagagactgtagaggaagtgactgactctggattcctg
ggcactacaccaaccttgtcctgctctcttcttggtgatgatgctttggtacaggtttat
ccagatgggatccggcacatccgagcagataagagagtaaatgaatggaagacaccagga
aagaaaaccattgtaaaatgtgctgtgaaccaaagacaagtagtcatagcactgactgga
ggagagctggtttactttgagatggacccgtcaggacagctgaatgagtacacagagaga
aaggagatgtctgctgacgtcgtttgcatgagcctggccaatgttccccctggggagcag
cgttcccggttccttgctgttggactggtggacaacactgtcagaattatttcacttgac
ccttcagattgtttacagcccctgagtatgcaggcactgcctgcacagccggagtcgctg
tgcatcgtggagatgggtggcacagagaagcaggatgagctgggggagaggggctccatt
ggctttctgtacctgaacattggactgcagaacggtgtgctgctgcggaccgtcctggac
cccgtcaccggcgacctgtccgacaccaggacccgctacctcggctcccggcccgtcaaa
ctcttccgtgtgcgcatgcaaggccaggaggcggtgctggccatgtcaagccgttcctgg
cttagttattcctatcaatcacgcttccacctgactcccctgtcttatgagacactggag
tttgcatctggttttgcttctgagcagtgccctgagggcattgtggccatctccacaaac
acattgaggattttggcactggagaagctgggagcagtcttcaaccaggttgccttcccc
ttgcagtacacaccccgaaaatttgtcattcacccagagagcaacaacctgatcatcatc
gagacagaccacaacgcttacactgaggccaccaaggctcagaggaagcagcaaatggct
gaggaaatggtggaggctgcaggtgaggatgagagggagctggctgcagagatggctgca
gcctttctgaatgagaatcttcctgagtccatcttcggtgctcccaaggcagggaatggt
cagtgggcctctgttatcagagtgatgaaccccatccagggaaatacattagatctggtt
cagctggagcagaatgaagctgctttcagcgtggccgtgtgccgcttctccaacacggga
gatgagtggtacgtgctggtgggcgtcgccaaggacctgatcctgaacccacgctcagtg
gctggggggtttgtctacacatacaagctggtgaatagtggtgagaagctggagttcctg
cacaagacccctgtggaggaggttcctgcagccattgctccattccaaggccgagtgtta
attggagttgggaagctgctgcgtgtgtatgacctgggcaagaagaaactgcttcggaaa
tgtgagaacaagcacattgccaactacatctgtgggatccaaaccattgggcacagagtg
attgtttcagatgttcaggagagtttcatctgggtgcgttacaaaaggaatgagaaccag
ctcattatctttgctgatgacacttacccccggtgggtcaccacagcaacgctcctggat
tacgacactgtggctggggcagacaagtttggtaacatctgtgtggtgagattgcctccc
aacaccaatgatgaggtagatgaggatcccacaggcaacaaagctctctgggacaggggc
ctgcttaatggagcatcgcagaaggctgaagtgattatgaattatcacgtgggagaaacg
gtgctttccttgcagaagaccacactgattccaggaggctctgaatctcttgtttataca
accttatcaggggggataggaatcttggtcccttttacttcccatgaggatcacgacttc
ttccagcacgtggaaatgcacttacggtctgagcaccctcctctctgtggacgggaccat
ctcagcttccgctcctactacttcccagtgaagaacgtgattgatggggacctgtgtgag
cagttcaactccatggagcccaacaaacagaagaatgtggccgaggagctggaccggacc
ccacccgaggtgtccaagaagctggaggacatccgcacgcgctacgcgttctga
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integrated database retrieval system
