Zonotrichia leucophrys gambelii (white-crowned sparrow): 135452732
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Entry
135452732 CDS
T09958
Symbol
TDRD12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12 isoform X1
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
zle03036
]
135452732 (TDRD12)
Enzymes [BR:
zle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
135452732 (TDRD12)
Chromosome and associated proteins [BR:
zle03036
]
Eukaryotic type
Gene silencing
piRNA pathway
135452732 (TDRD12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
DEAD
CS
Helicase_C
Motif
Other DBs
NCBI-GeneID:
135452732
NCBI-ProteinID:
XP_064579183
LinkDB
All DBs
Position
11:16082371..16104301
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AA seq
1244 aa
AA seq
DB search
MAERLLLPSLVVIRETQEINMEVIVLKAEDPSCFWIAVREPVPGVVGETVYENLNAEMEQ
FYTSYKGTDEVKEEEIKKGQVYVVFSEELKCWCRALVQSVWCQADGYQLSCFLVDYAKYC
YVPSKSIRVLPGAFAKIPHRAKKCRLHCTKPLTLHIDYCENTAKIGPAKRWDTAAIQHFR
KLLEEATEVKATIQTVEDKVLEVFLFVTIKDEKICVNDDLVAKHFAHYKEDEGTAGSSSD
DSDDELSLNAEGVPVEFVGPTFLARPKLPFGEEVSPHLGPGLAGCNSVPKKPSQTLRTDL
NDSTVPVVSTVPDLPSKEDKAVQTERIPQFLNSSSLQTHTVEDEKQSLQDVGKEKDFVFL
SKKIEPSSVLEAAPLSDGLKKELACNKFSGPTFTQSYCWPAAAGGCDVVAISHQGNDPLL
YIPPVLTLLQENHYQALPNMSGPLALVLCPGWKKAQLVFDLLKTYRKGCRHLHPVLITLG
QNKEAASQMEIRGCEVVVTTPYNLLRLLEHNTGFLCRLCHLVLDEIEVLFSDTSEQVFTI
LDFYKKATARPRGNLPHQIIAVGTQWNKHITPLIKEFMNDPHIVITLIEEAAIFGNVQQV
VQPCISSSRTAELLKILDFTQRNLQKVLVFTDSVTEVEMIHKALKSNSIVSLKKHKESKC
NAECVLERWRKMHSSGTPAVLVLTDDCLPSLGITDAAWVIHFSFPSAAVFGQRLQSLSDN
FCPGIKDSAVDQEDMKAKSVILLTENSSCHAPEIFYYLKRAEAEIPEELYDLTARVQESE
EDEKFSRPLCASLKTFGICRNRTECPDRHQINLSVDMAQNIAAEMIETPERVTILPLFIV
HATKYFGRIVRKQKDQYTAVAKDMNDYFKVPGHRISVNAVEKSVFYGLREGAVCHRVQVV
ETPAKDEENACKVTIKYIDEGRTSQVNSDQLLHLPVKFQSLPPQAVEIIVCRVKPIDNEV
EWNPKVTEHINHKIKGKVHHAKVVQTLGRTVWVDPMVGVTHLPTMRMWVNEYNIRSEILS
TGLGTDNPEHVGAIQKLCTQMPVVDHGQSLEPLSTEEDTADLEEVSSPPIQKNSSESCSS
PVTPPSNYVIQTKEAEDSTVHQQQGCHPPIKWFQDDVSVTLKVQILRATESRCEFCREKV
TFSAYSEGKRYVADLELYQSVIAEKSTCVVKDTEAVILLVKEKKGTWCKLLKNKNVHVSL
DFECWQESEDETPFTVGSGKLNYPPAGSEEWFESSEDSDTESDE
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaggctccttcttccttccctagtagtgataagagagacacaggagataaac
atggaagtcatagtattaaaggctgaggatccaagttgcttttggattgctgtgagagaa
cctgtgcctggtgtagtcggtgaaactgtgtatgaaaacctgaatgctgaaatggaacag
ttttatacctcttacaaaggtacagatgaagtaaaagaagaggagattaaaaaaggccag
gtttatgtggttttcagtgaggagctgaagtgctggtgcagggctctggtgcagtcagtg
tggtgccaggcagatggttaccagctcagctgtttcctcgtggattatgccaagtactgc
tatgttccatcaaagagcattcgagttttaccaggagcatttgcaaagatcccacacaga
gcaaagaagtgtcggctgcactgcacgaagcctctgacactgcatattgactactgtgaa
aacactgccaaaataggaccagccaaaagatgggatactgctgccattcagcattttcga
aagcttcttgaagaggctaccgaggttaaagccacaatacagacagtagaagataaagtg
ttagaggtgttcctttttgtgactataaaagatgaaaagatctgtgttaatgatgatctg
gttgccaagcactttgctcattacaaggaagatgaagggactgcagggagttcctcagat
gattctgatgatgaactgtccttaaatgctgagggtgttccagtggagtttgttggtcct
acgtttcttgccaggccaaaactgccctttggggaggaggtgtcaccacatcttgggcca
ggtcttgctggctgtaattctgttcctaaaaagccatcccaaacattacgcacagatcta
aatgacagtacagtgcctgtggtcagcacggtgccagatttgccttccaaggaagataaa
gcagttcagacagagaggattccacagttcttgaattccagttcccttcagacacataca
gttgaagatgaaaaacagagtttacaagatgttgggaaagaaaaagactttgtgttcctg
agcaagaaaattgaaccatcatcagttttggaagcagcaccactttctgatggtctgaaa
aaggaacttgcttgtaacaagttttcaggccctaccttcacccagtcctactgttggcca
gcagcagctgggggatgtgatgtcgttgccatctcccatcagggaaatgatcccttgtta
tatattccaccagttcttaccctgctgcaggaaaatcactaccaagccttgccaaacatg
agtgggccactagcactggttttatgtcctggatggaagaaggcacagcttgtttttgac
ctgctgaaaacgtacaggaagggctgcagacaccttcatccagtgctgataaccctcggg
cagaacaaggaagcagccagccaaatggaaatccgaggctgtgaagtagtagtgactaca
ccatacaacctcctgagactgctggaacacaacactgggttcttgtgtaggctttgccat
cttgttcttgatgagatcgaggtgctgttttctgacacttctgaacaggtgtttaccata
ctggatttttacaagaaggccactgctcggccacgggggaatctgccacatcagatcatt
gctgtgggaactcagtggaataaacatatcacacccttgataaaggagttcatgaatgat
cctcacattgtgataactcttattgaggaagctgccatctttggaaatgtgcaacaggtg
gtgcagccctgcataagcagcagcagaactgctgagttactcaaaatcttggattttacc
cagaggaatcttcagaaagtgctggtcttcactgactcagtaactgaagtagagatgatt
cataaggcactgaagagcaactcaatagtttccttgaaaaagcataaagagagcaagtgt
aatgctgagtgtgtcttggagaggtggagaaaaatgcacagttctggcactcctgctgtg
ttagttttaacagatgactgcctgccctccttgggaatcacagatgcagcttgggtgatc
catttcagtttcccatctgcagcagtcttcgggcagcgtctgcaaagcttgagtgacaac
ttctgccctggaataaaggattctgctgtagatcaggaagacatgaaggcaaagtcagtc
attctgctgacagagaacagttcctgtcatgcacctgagattttctactacttaaagcgt
gcagaagctgaaattccagaagagctctatgatttgactgccagggtgcaggaatctgag
gaagatgagaaattttcaagacccctgtgtgcttctctgaaaacatttgggatttgcagg
aacagaacagagtgtccagatcgtcatcaaattaatttatcagtagacatggctcagaat
attgcagctgaaatgatagaaacacctgaacgtgtgacaatcctgcctctcttcattgta
catgcaacaaagtactttggtcgaatagtcaggaaacaaaaggaccaatatacagctgtt
gctaaagacatgaatgattacttcaaggtaccaggacacaggatttctgtgaatgctgtg
gagaagtcagtgttctatgggttacgtgagggagctgtttgccacagggttcaggtggta
gagactccagcaaaagatgaagaaaatgcctgtaaggtcacaattaaatacatagatgaa
ggcaggacaagtcaagtgaacagtgatcagctgcttcacttgcctgtgaagtttcagagt
ctgccacctcaggctgtggaaattatagtttgtagagtaaaacccatagataatgaagtc
gaatggaatccaaaggtgactgagcacatcaatcacaaaattaaaggaaaagttcatcat
gcaaaagtggtgcaaaccttgggaaggacagtttgggttgacccaatggttggggttacc
catctccccacgatgaggatgtgggtcaatgagtacaacattcggtctgagattctgtca
acgggtttgggaactgacaatcctgaacatgtaggagcaattcagaagctgtgcacgcag
atgccagttgtggatcatggacagagcttggagcctttaagcacagaagaggacacagct
gatctagaggaggtgtctagtccaccaatacagaaaaattcttctgaaagctgtagcagt
cctgtgactcctccaagcaattatgtaattcaaacaaaggaagcagaagactctactgtg
catcagcagcagggctgtcatccaccaatcaagtggtttcaagatgatgtgagtgtgaca
ctgaaggtacaaatactgagagcaactgagagtagatgtgagttctgtagagaaaaggtg
actttcagtgcttattcagaagggaaacgttacgtggctgacctggagctgtaccagtca
gtaattgcagagaagtccacatgtgtggttaaggatacagaggctgtgattttactggta
aaagagaagaaaggaacatggtgcaaattactgaagaacaagaatgttcatgtgtccttg
gattttgaatgctggcaagagtctgaagatgaaacgccttttacagttggttctggaaaa
ctgaactaccctcctgcaggatctgaggagtggtttgagtcctcagaagacagcgataca
gaaagtgatgagtaa
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