Zonotrichia leucophrys gambelii (white-crowned sparrow): 135452788
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Entry
135452788 CDS
T09958
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135452788 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zle03019
]
135452788 (EDC4)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135452788 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
135452788 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
Beta-prop_HPS5
WD40_CDC20-Fz
WD40_Prp19
WDR55
RnlA-toxin_DBD
Motif
Other DBs
NCBI-GeneID:
135452788
NCBI-ProteinID:
XP_064579266
LinkDB
All DBs
Position
11:7008884..7042059
Genome browser
AA seq
1402 aa
AA seq
DB search
MASCSSIDIEDATQHLRDILKLDRPGGSVNENQRPSNSYNGDLNGLLVPDPLGSGDGAAL
AKPVHRSISLGALQDKQVICLSGDDSSTCLVISAKDVEVVASSDSSITSKARGSNKVKIQ
PVARYDWEQKYYYGNLIAVSNSYLAYAIRAASNGSAMVRVLSVSTAERTLLKGFTGGVAD
LAFAHLNSNQLACLDEAGNLFVWRLAMDKEKIQEEILVNIKRPDNTPLNTFRRIIWCPFI
PDDSEESGEEGSQTLALLHEDRAEVWDLDIIRTNNSSWPVEVPDIKEGFIVVKGHSTCLS
EGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGKPLSCLLFCDNHKKQD
PEVPFWRFLITGAEQNRELKMWCTVSWTCLQTVRFSPDIFSSMNIPPSLKVCLDLSAEYL
ILSDVQRKVLYVMELMQNQEEGKAYFSSISEFLLTHPVLSFGIQAVSRCRLRHTEVLPAE
EETDSLSVEGAQGSGAVESAAGVLIKLFCVHTKALQDVQIRFQPLHSPDTSASMPAHGSH
EEFAFPDHMADLGTEGLGSEKESVHGSQPDLRRIADLPVPADFLSLSSDAKPKLMTPDAF
MTPSTSLQQIAVSPGSSVSSLTAVTAMSSTSVTDASLPRASEDLTVSPKMQLDTSLTLSS
SSSSLQTSPRSHSVLIPGLPDKLTPKAPVPVTPGNSSLALELQEVEPLVVPQASPTRERS
PDVISSASTAMSQDIPEIASETLQRSFAAAAPALPGEALEPGHHADSMASAASALHLLSP
RNRHNSEHSHHSLDMPPVEVDRLNAPSLLETALTQENASSDSVVSQPWPAAPDITRETRN
SMADSPRDEVEEKHKSSSYHRHSYHLLQHDSQDASAEQSDHDDEVASLASTSGGFGAKAS
AQRLPVKDWKVKASPRASPKLKRKGKKDDGDMNQSPRSSNNQVTAEFQEEVMCILRSQQR
ELSELRQTQVELLQRLTDHLDAIQSSLMGHMERVIDSQHEQEQRRLERVLLEGQQRNGQL
QEQLSQQLSQSLSTAVCNRLERTIREEMKKTVPQCISKSMDPTVSQLSNTIATKLTAVEG
TLKENITKLVKSKNLTDSVVRATADTLQGPIQSAYREAFQSVVLPAFEKSCQSMFQQIND
TFKQGTQEYIQQLEAHLKNKKVREQEVREPLLGQLRQLLSALQSSTEQLASSVTASVHAE
LQHQLHLIVGNMQESILAQVQRVIKGEVSLAMKEQQAAVTSSIVQAMRSAAGTPIPSTHM
DFQSQQTHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDTQQVFGQHPCPLSQPVLL
SLIQQLSSDLGTRTELKLNYLEDAVMHLDQSDPITRDHMGSVMNQVRQKLFQFLQVEPHN
PLSKPARRLMIMLQGLVTPGMT
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgctccagcatcgacatcgaggacgccacgcagcacctgcgggacatcctc
aagctggaccggccgggaggttcggtgaatgagaaccagaggccgtcgaattcgtacaac
ggggacctgaatgggctgctggtgcctgacccccttgggagcggggatggggctgctctg
gccaagcctgtgcatcgcagcatctccctaggagccctgcaggacaagcaagtcatctgc
ctttctggtgatgacagctccacgtgcttagtgatatcagcaaaagatgtggaggtagtg
gccagcagtgattccagcatcaccagtaaggccagagggagtaacaaggtgaaaatacag
cctgttgctagatatgactgggagcagaagtactattatggcaatctgatagctgtctcc
aactcttacctggcttatgccattagagctgccagcaatggctctgccatggtgcgggtg
ttgagtgtgagcactgctgagcggaccttgctgaagggattcacgggaggtgtggcagac
ctggcctttgctcacctcaactccaaccagctggcctgcctggacgaggctggcaacctt
tttgtctggcgcctggccatggataaagaaaaaatccaagaggagatcctggttaacatc
aagaggcctgacaacacccccctgaacaccttccggagaatcatctggtgccccttcatc
cccgacgacagcgaggagagcggcgaggagggcagccagaccctggcattgctgcatgag
gacagggcagaggtgtgggacttggacatcatccgaaccaacaacagctcctggccggtg
gaagtgcctgacatcaaagaaggcttcattgtggtgaaaggccacagcacgtgcctgagc
gagggagcactttctccagatggaactgtgttggccacagcaagccatgatggttttgta
aaattctggcagatctatattgagggacaggatgagccaaggtgtcttcatgagtggaaa
ccccatgatggtaaacctctttcctgcctgctcttttgtgacaaccataaaaaacaagac
ccagaagttcccttctggaggtttctcatcacaggagccgagcagaacagagagctgaag
atgtggtgcacggtgtcctggacctgtctgcagactgttcgcttttcccctgacatcttc
agctccatgaatattcctcccagcctgaaagtctgcctggacctctcagctgagtatctg
atactgagtgatgtgcagaggaaagtcttgtatgtgatggagttgatgcagaaccaggag
gagggcaaggcttacttcagctccatctcagagttcctcctgacccacccagtgctgagc
tttggcatccaggccgtgagccgctgccggctgcggcacaccgaggtgctcccggcagag
gaggagactgacagcttgagtgtagaaggtgctcagggctctggggctgttgaatcagca
gcaggtgttctgataaaactcttctgtgttcacaccaaggccctacaggatgtgcagatc
agattccagcctcttcacagccctgacacaagtgcttccatgcctgcccatggctctcat
gaagaatttgcctttccagaccacatggctgatctgggcacggaggggctgggctctgag
aaggagtctgtgcacggctcccagccggacctgcggcgcatcgccgatctgcccgtgcca
gctgactttctgtccctgtccagtgatgccaagcccaaactgatgactccagatgcattc
atgacaccaagtacttctcttcaacagatcgctgtctctccaggcagcagtgtcagttcc
ctgactgcagtcacagccatgagcagcacttctgtcacagatgcctctctgcccagagct
tcagaagacttgacagtgagccccaagatgcagctggacaccagcctgacgctgagcagc
agcagcagcagtctccagaccagtcccaggagtcactctgttcttatcccaggcctccct
gacaagcttacaccaaaggcacctgttccagtgacaccaggaaactcctctctagcactg
gaactgcaggaagtggagcccttggtggtgccccaggcttctcccacccgtgagcgctcc
ccagacgtcatttcctctgcttccacagccatgtcccaggatatcccagagattgcttcc
gagacgctgcagcgcagcttcgcggcggcggcgcccgcgctgcccggggaggcgctggag
cccgggcaccacgcggacagcatggcctcagccgcctctgccctgcacctgctgtccccc
aggaaccgccacaactccgagcacagccaccactctttggacatgcctccagtggaggtg
gacagactgaatgctccatcgttactggagactgctttaactcaggaaaatgcatcttct
gacagtgttgtgagtcagccgtggccggcggcccctgacataacccgggaaaccaggaac
agcatggcagacagcccaagggatgaggttgaagaaaagcacaagagttcttcctaccat
cgacacagctaccaccttctgcagcatgacagccaggatgccagtgcagagcaaagtgac
cacgatgatgaagttgcaagcttggcttctacatcaggtggatttggtgccaaggcatca
gcacagaggctgcctgtgaaggactggaaagtcaaagcatccccccgggcctccccaaag
ctgaagaggaagggcaagaaggatgatggggacatgaaccagtcaccaagatcatctaac
aaccaggtgacagcagagttccaggaggaggtgatgtgcatcctgaggagccagcagcgc
gagctctcggagctgcggcagacgcaggtggagctgctgcagaggctcacggatcacctc
gacgccatccagagctccctcatgggccacatggagagggtcatcgactcccagcacgag
caggagcagaggaggctggagcgggtgctgctggaggggcagcagcgcaatgggcagctc
caggagcagctgtcccagcagctctcacagtcgctgtccacggccgtgtgtaaccgcctg
gagaggaccatccgcgaggagatgaagaaaacagtgccccagtgcatttccaagagcatg
gaccctacagtcagccagctcagtaatactattgctaccaagctcactgctgttgagggc
acactgaaagagaatattaccaagctagtgaaatcaaagaaccttacagacagtgttgtg
agggccacagctgacactctgcagggacccatccagtcagcctacagggaggccttccag
agcgtcgtgctgccagcctttgagaagagctgccagtccatgttccagcaaatcaatgac
accttcaagcagggcacacaggaatatatccagcagctggaggctcacctgaagaacaag
aaggtgcgtgagcaggaggtgcgggagccgctgctggggcagctgcggcagctgctgagc
gccctgcagagcagcacggagcagctggcctccagcgtcaccgccagcgtgcacgccgag
ctgcagcaccagctccacctcatcgtgggcaacatgcaggagtctattttggcccaggtg
cagagagtcattaaaggagaggtgagcctggccatgaaggagcagcaggcagctgtcacc
tccagcattgtccaggccatgcgctcggcagccgggacacccatcccctccactcacatg
gacttccagtcccagcagactcacatccttcagctgctccagcagggacacctcaaccag
gctttccagcaggctctaacagcagctgatctcaacctggttctctatgtctgtgagact
gtggatactcagcaagtatttggacagcatccatgcccactgtcccagcctgtgctgctc
tccctcattcagcagctctcctcagatctgggcactcgtacagaactgaagttgaactac
ttggaggatgcagtgatgcaccttgaccaaagcgaccccatcacccgagaccacatgggg
tcagtcatgaaccaggtgcggcagaagctcttccagttcctccaggtggaaccccacaac
cctctgagcaagcctgcgcgtcgcctcatgatcatgctgcagggcctggtcacccctggc
atgacctag
DBGET
integrated database retrieval system
