KEGG   Zonotrichia leucophrys gambelii (white-crowned sparrow): 135453019
Entry
135453019         CDS       T09958                                 
Symbol
POLR2C
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB3
  KO
K03011  DNA-directed RNA polymerase II subunit RPB3
Organism
zle  Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03020  RNA polymerase
zle03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:zle00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    135453019 (POLR2C)
  09124 Replication and repair
   03420 Nucleotide excision repair
    135453019 (POLR2C)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zle03021]
    135453019 (POLR2C)
   03400 DNA repair and recombination proteins [BR:zle03400]
    135453019 (POLR2C)
Transcription machinery [BR:zle03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     135453019 (POLR2C)
DNA repair and recombination proteins [BR:zle03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      135453019 (POLR2C)
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_L
Other DBs
NCBI-GeneID: 135453019
NCBI-ProteinID: XP_064579680
LinkDB
Position
11:complement(6629357..6636262)
AA seq 275 aa
MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH
DEFIAHRLGLIPLTSDDIVDKMQYSRDCTCDEFCPECSVEFTLDVRCNEDQTRHVTSRDL
ISNNPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
GVAFEYDPDNALRHTVYPKPEEWPKSEYSEIDDEDAQAPYDPNGKPERFYYNVESCGSLR
PETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN
NT seq 828 nt   +upstreamnt  +downstreamnt
atgccgtacgccaaccagcccaccgtgcgcatcaccgagctcacggacgagaacgtcaag
ttcatcatcgagaacacggacctggcggtggcgaattccattcgaagggtgttcatcgca
gaagtccccatcatagctattgactgggtccagatagatgccaactcctctgtgctccac
gatgagttcattgcacacaggctgggtctcatcccgctcaccagcgacgacattgtggat
aagatgcaatattccagagactgcacgtgtgacgagttctgccccgagtgctccgtggag
ttcacgctggacgttcgctgcaacgaggaccagacccggcacgtgacatcccgggacctc
atctccaacaacccccgtgtcatcccggtgacatctcggagcagagacaacgaccccaat
gactacgtggagcaggatgacatcctgatcgtgaagctgcgcaaggggcaggagctgcgg
ctgcgcgcctacgccaagaagggctttggcaaggagcacgccaagtggaaccccacggcc
ggagtggccttcgagtacgaccccgacaacgcgctcaggcacaccgtgtaccccaagcca
gaggagtggcccaagagtgagtactcggagattgacgatgaggatgctcaggctccctac
gaccccaatgggaagccagagaggttctattacaacgtggagtcctgtggctccctgcgc
cccgagaccatcgtcctgtctgccctgtccggcctcaagaagaaactgagcgacctccag
acacagctgagccacgagatccagagtgatgtcctcactatcaactga

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