Zonotrichia leucophrys gambelii (white-crowned sparrow): 135453488
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Entry
135453488 CDS
T09958
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
135453488 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zle01009
]
135453488 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
zle04515
]
135453488 (PCDH1)
Protein phosphatases and associated proteins [BR:
zle01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
135453488 (PCDH1)
Cell adhesion molecules [BR:
zle04515
]
Cadherins
Protocadherins
135453488 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
K319L-like_PKD
TMEM154
Cadherin_4
Mid2
Syndecan
Motif
Other DBs
NCBI-GeneID:
135453488
NCBI-ProteinID:
XP_064580665
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All DBs
Position
13:16377841..16436004
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AA seq
1225 aa
AA seq
DB search
METPRDQRAGARHGAQRRHHPTPLQRRMNPLASCLGLWLLCQLPALASGTRAVYKVQEEQ
PPNTLIGSLASDYGLPDMGHLYKLEVGAPYLRVDGKTGDIYTTETSIDRESLRECQHLLP
GEPCFLEFEVSITNLNANSSPRLLEGQIEVLDINDNTPNFASPVLTLSIPENTNVGTLFP
IPLAMDRDSGPNGVASYELMAGPEAQELFGLQVAEDQDEKQPQLIVMGNLDREQWDSYDL
TIKVQDGGNPPRASSALLRITILDMNDNAPKFEKALYEAELSENSPVGHSVLQVKANDSD
QGANAEIDYSFHQASDMVRRLLRLDRATGLITVQGPIDREDIGTLKFSVMAKDKGANPKS
ARTQVVVTIKDMNDNAPSIEIRGIGLVTHQDGMANISEDVPVETAVALVQVSDRDEGENA
VVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYESVKEYTIEIVAVDSGNPPLSS
TNSLKVQVMDVNDNAPVFSQSFTEVAFPENNEPDELVMEVSATDADSGSNAKLVYSLVTD
PSSKGAFTIDPDSGEIRVKAVLDREQRERYEFLVVAEDKGSPSKQGTASVAINVMDRNDN
DPKFMLSGYNFSVMENMPPLSPVGMVTVIDADKGENARIQLSVEQDNGDFVIQNGTGTIL
SSISFDREQQSTYTFRLKAVDGGDPPRSAYVGVTINVLDENDNAPFITSPSNATYKHILP
HTSPGQQVSKVKAEDIDSGINAELIYSITGGNPFELFQISPQSGDITLEKEILRKHHGLH
RLVVRVNDKGKPSRHGTALVHFYVNETLANRTLLDTLVGHSLDTPLDIDIAGDPEYERSK
QRSNILFGVIAGIVAVTLVIVLVVLVRYCRQREAKSGYQAGKKETKDLYAPKQASKGGKS
KNKVKKSKSPKPPKPTEDEEETGLQKSLKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHY
RSNSPLPSIQLQPQSPSASKKHQVVQDLPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKY
TNKQLPHRRVTFSAASQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHY
ERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECTEFGHSDTCWMPGQSSPSRRPKNAL
KLSTFVPYQDRGSQEQVGNGSPRLSEERSTKMANLRLLPTYSAFSNSSHEPCKDSPMEEI
PLTQTSDFQPATTPSAQTTKREIYL
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggagacgccgcgggaccagcgcgcaggggctcggcacggagcgcagcgccggcaccat
ccaactcccctgcagcgcaggatgaacccgctggcatcctgcctgggcctgtggctcctg
tgccagctccctgccctggcctcggggacacgtgcggtctacaaagtgcaggaggaacag
ccccccaacaccctcatagggagcctggcctctgactacggcttaccagacatggggcac
ctctacaagctggaagtgggggccccgtacctgcgtgtggatggcaagactggggacatt
tacaccacagagacctccatcgaccgggagagcctgcgggagtgccagcacctcctgccc
ggagagccctgcttcctggagttcgaggtgtccatcaccaacctgaacgccaacagcagc
ccgcgcctgctcgaggggcagatcgaggtgctcgatatcaatgacaacacccccaacttc
gcctcgcctgtcctcaccctctccatccctgagaacaccaatgtcgggacgctcttcccc
atcccgctggccatggaccgggactcgggccccaacggtgttgcctcctacgagctgatg
gctggtccggaggcgcaggagctctttgggctgcaggtggccgaggaccaggatgagaag
cagccccagctgatcgtcatggggaacctggaccgggagcagtgggactcctacgatctg
accatcaaggtgcaggatggggggaacccccctcgggcgagcagtgccctgctccgcatc
accatcctggacatgaacgacaatgcacccaagtttgagaaggccctgtacgaggcagag
ctctctgaaaacagccctgtggggcactccgtcctccaggtgaaagccaacgattcggac
cagggagccaacgccgagatcgactactccttccaccaggcctcggacatggtgcggcgg
ctgctgcgcctggaccgtgccacggggctcatcaccgtgcagggccccatcgaccgcgag
gacatcggcactctcaagttctccgtcatggccaaggacaagggcgccaaccccaagagc
gcccgcacgcaggtggtggtcaccatcaaggacatgaatgacaacgcaccctccatagag
attcggggcatagggttggtcacccaccaggatggcatggccaacatctcggaggacgtg
ccagtagagacagcagtggctctggtgcaggtgtccgaccgagatgagggtgaaaacgct
gtggtgacctgtgtggtggccggtgacgtcccattccagctgcgccaggccagtgagaca
gggagtgacagcaagaagaaatacttcctgcagaccaccacgccactggactacgagtcg
gtgaaggagtacacgattgagattgtggccgtggactcggggaacccgcccctctccagc
accaactccttgaaggtgcaggtgatggacgtcaatgacaacgcccctgtcttcagccag
agcttcactgaggtggccttccctgagaacaacgagcccgatgagctggtcatggaggtg
agtgccactgatgctgacagcggctccaacgccaagctggtttattccctggtgacagac
ccctcctccaagggcgccttcaccattgaccctgactctggggagatccgggtgaaggcg
gtgctggaccgagagcagcgggagcgctacgagttcttggtggtggcagaagataagggc
agccccagcaagcagggcacagcatctgtggccatcaacgtcatggacaggaatgacaac
gaccccaagttcatgctgagcggctacaacttctcagtgatggagaacatgccacccctc
agccccgtgggcatggtgacggtcatcgatgctgacaaaggagaaaatgcccggatccag
ctgtcagtggagcaagacaacggggattttgtcatccaaaatggcactggcaccatcctc
tccagcatctctttcgaccgggagcagcagagcacctacaccttccgactcaaggcggtg
gacggtggggatccccccaggtctgcctatgtgggggtgaccatcaacgtcttggatgag
aatgacaatgcccccttcatcacttctccctccaacgccacctacaagcacatcctgccc
cacaccagccccggccagcaggtgagcaaggtcaaggcggaggacatcgactcgggcatc
aacgccgagctgatctacagcattacaggaggaaacccctttgagctcttccagatctcc
ccgcagagcggtgacatcactctggagaaggagatcctgcgcaagcaccacggcctgcac
cgcctggtcgtgcgcgtcaacgacaagggcaagccctcgcggcacggcacggccctggtg
cacttctacgtcaacgagacgctggccaaccgcacgctgctggacacgctggtggggcac
agcctggacaccccgctggacatcgacatcgccggcgaccccgagtacgagcgcagcaag
cagcggagcaacatcctcttcggggtcatcgccggcatcgtggctgtcaccctggtcata
gtgctggtggtcctggtgcgctactgccggcagcgcgaggccaagagcggctaccaggcg
ggcaagaaggagaccaaggacctgtacgcacccaagcaggccagcaagggtgggaagagc
aagaacaaggtgaagaagagcaagtctcccaagccacccaagcccacggaggatgaggag
gagacggggctgcagaaatcgctcaagttcaacctcatgaacgactctgtcagcgacagc
ccccggatccacctgcccctgaactaccctccgggcagcccggacctgggccgccactac
cgctccaactcgccgctgccctccatccagctgcagcctcagtcaccctctgcctccaag
aagcaccaagtggtgcaggacctgccggccaccaacacctttgttggcaccggggacaac
aactcgacgggctccgagcagtactcggactacagctaccgcaccaacccccagaaatac
accaacaagcagttacctcatcgccgagtgacgttctctgcagccagccaggctcaggac
ctgcaggacccctcccagcacagctactacgacagcgggctggaggaatccgagaccccc
agcagcaaatcttcatcagggccccgcatcgggcccctggccctgcccgaggaccactac
gagcgcaccacgcccgatggcagtatcggggagatggagcaccccgagaacgatctccgg
cctctgcccgatgtagccatgactgggacttgcacccgggagtgcacagagttcggccac
tccgacacctgctggatgcctggccagtcctcccccagccgcaggcccaagaacgccctc
aaactctccacttttgtgccttaccaagacagagggagtcaagagcaagtcgggaacggc
agccccagactgtcggaagagcgcagcaccaaaatggccaacctccgcctgctccccacg
tacagtgccttctccaatagtagccatgagccctgcaaggactctcccatggaggaaatt
cctctcacccagacctcggacttccagccagccaccaccccctcggcccagaccaccaag
agggagatctacctgtga
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