Zonotrichia leucophrys gambelii (white-crowned sparrow): 135453686
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Entry
135453686 CDS
T09958
Symbol
DDX46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135453686 (DDX46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zle03041
]
135453686 (DDX46)
Enzymes [BR:
zle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135453686 (DDX46)
Spliceosome [BR:
zle03041
]
Complex A
U2 snRNP components
U2 related factors
135453686 (DDX46)
Complex B
135453686 (DDX46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
135453686
NCBI-ProteinID:
XP_064581044
LinkDB
All DBs
Position
13:complement(9310543..9330748)
Genome browser
AA seq
1043 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPSDKRKREDRRSRSRERDRRRDRSRSRDKRRSRS
RDRKRQRRSRSRERERSRERRRSRSRERRRSRSRSRGRRSRSSSPSKNRKTENRSRSKEK
TDGVDISKEKKKDKDDKEEEKDKDATTNAVATENFDQNKLEEEMRKRKERVEKWREEQRK
KAMENIGELKKEIEEMKQGKKWSLEDDDDDEEETAEGEKEGNEVEDEELDPLDAYMEEVK
EEVKKFNMRSVKGGGGSEKKTGPTVTKVVTVVTTKKASAESEKKKGELMENDQDAMEYSS
EEEEVDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMTQEEVNVYRLE
LEGITVKGKGCPKPIKTWVQCGISMKILTALKKHGYEKPTPIQTQAIPAIMNGRDLIGIA
KTGSGKTIAFLLPMFRHIMDQRALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRV
VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFD
MGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQH
VIVIEEENKFLKLLELLGHYQEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQY
DRDSIINDFKNGTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNK
GYAYTFITEDQARYAGDIIKALELSGNPIPPDLEKLWADFKEQQKAEGKLIKKSSGFSGK
GFKFDETEQALANERKKLQKAALGLQDSDDEDTAVDIDEQIESMFNSKKRVKDMAAPGTS
NAPTPSAGNAEKLEIAKRLALRINAQKNLGAEAQVMVPFHFKDVMQQATNAILRGGTIQA
PTVSAKTIAEQLAEKINAKLNYVPIEKQEEEKQDGGQNESFKRYEEELEINDFPQTARWK
VTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRL
IKEELIRLQNSYQPTNKGRYKVL
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgggccgcgagtccaggcattaccggaagcgctcggcgtcccggggccgctccgggagc
cgctccaggagccgctccccgtcggacaagaggaagcgcgaggaccggcgctccaggagc
cgcgagcgggaccgccggcgggacaggtcacgcagcagggacaagaggaggtctcgctca
cgggacaggaagcgtcaaagacgttcgaggagcagagaaagggagcggagccgagagagg
agacggtcccggagccgggagaggaggcgctcacggagcaggagtagagggagacgctcc
cgatcctccagtccaagcaagaacaggaagacagaaaacagatcaagatctaaagaaaag
acagacggtgtggacatttccaaagaaaagaaaaaggacaaagatgacaaagaggaagag
aaagacaaagatgctaccacaaatgctgtggccactgagaattttgatcagaataaacta
gaagaagaaatgagaaaacgaaaagaaagagtggagaaatggagggaagaacaacgcaag
aaggcaatggaaaacataggagagctgaaaaaagaaattgaagagatgaaacaagggaaa
aaatggagtttagaagatgatgatgatgatgaagaggaaactgcagaaggagaaaaagaa
ggcaatgaggttgaagatgaggaattagatcctttagatgcttatatggaagaagtaaaa
gaagaggtcaagaagttcaatatgagaagtgtgaaaggtggaggtgggagtgaaaagaaa
actggaccaactgttaccaaggtggtaactgtggtgacaaccaaaaaggcatctgctgag
tcagaaaagaagaaaggggaactcatggagaatgaccaagatgcaatggagtattcctca
gaagaggaggaagttgaccttcagactgccctgactggctatcagaccaagcagagaaag
ctgctagaaccagtggatcatggaaagatagaatatgaacctttcaggaaaaacttctat
gttgaagttccagaactagctaaaatgactcaagaagaggtcaacgtgtacaggctggag
ctggagggaattacagtcaagggaaaaggctgtcccaaaccaataaaaacctgggtacaa
tgtggtatttccatgaagattctcactgccctcaaaaaacatggctatgaaaagcccact
cccattcaaacccaggctatcccagcaattatgaatggacgggatttgattggcattgct
aaaacaggaagtggaaaaacgattgcatttctgttgcccatgttcagacacatcatggat
cagagagcattagaagaaggagaaggtcccatagctgtcattatgacacctacacgtgag
ttggctttgcagattaccaaggagtgcaagaaattctcaaagactcttggacttcgagtt
gtgtgtgtttatggaggaacaggaatcagtgaacagatagctgaactcaaaagaggtgct
gaaattattgtttgcacacctggacgtatgattgacatgttagcagctaacaatggtcgg
gtgacaaacctccgcagagtcacgtacgttgtgcttgatgaagctgacagaatgtttgac
atggggtttgagcctcaggtcatgcgcattgtagacaacgtcaggcctgaccgtcagact
gtcatgttctctgctactttccccagagctatggaggccctggctcgcaggatcctcagc
aaacccatagaggtgcaggttggaggcaggagtgttgtctgctctgatgtggagcagcac
gtgattgtcatagaagaggagaacaaatttctgaagttactggagctactgggacattat
caggagaaaggatctgttatcatatttgtagataagcaagaacacgctgatgggttgttg
aaagatttaatgagggcctcttatccttgcttgtctctccatggaggtattgatcagtat
gacagagacagcatcattaatgacttcaagaatggaacctgcaaacttctggtggccaca
tctgtagcagccaggggcttggatgtgaagcagctgatgctggtggtcaattacagctgt
cccaaccactatgaggactacgtgcaccgagccggccgcaccgggcgagctggcaataaa
gggtatgcatatacattcattactgaggatcaggcacgttatgctggtgatatcattaag
gctttggaattgtctgggaatccaattcctcctgatttggagaagctctgggctgacttc
aaagagcaacagaaggctgagggaaagttgattaaaaaaagcagtggattctctggcaaa
ggttttaaattcgatgaaacagaacaggctttggctaatgaaagaaagaagctacaaaaa
gcagctcttggcttgcaggattctgatgatgaagatacagctgttgatattgatgaacaa
attgaaagcatgttcaattccaagaaaagagtaaaagacatggcagcaccaggaacatca
aatgctcctacaccatcagctggcaatgcagaaaaattggaaattgctaaaagattggct
ttgagaatcaatgcccagaagaatcttggagcagaggcacaagtcatggttcccttccac
tttaaggatgtgatgcagcaggctacaaatgctatcctgagaggaggcacaattcaagct
cctactgtgtctgccaagaccattgcagagcaactggctgaaaaaatcaatgccaagctc
aattatgtacccatagagaagcaggaggaagagaaacaggatggaggacagaatgaatcc
ttcaagagatatgaagaagaattagagatcaatgacttcccacagactgccagatggaaa
gttacctccaaagaagcactgcagagaatcagtgaatattctgaagctgccattacaatc
aggggaacttatttccctccaggcaaagaacccaaggaaggagaacgaaagatttatttg
gctattgaaagtgccaatgaacttgctgtacagaaagcaaaggcagaaatcacacgactt
ataaaagaggagctcatcagattgcaaaattcttaccaaccaaccaacaaaggaagatac
aaggttctatga
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